From 2f8d1ea75393012db95127ecc917ec81766d1afb Mon Sep 17 00:00:00 2001 From: Bradford Powell Date: Tue, 22 Oct 2019 10:22:07 -0400 Subject: [PATCH] Add '-L' option to curl This allows curl to follow 302 redirects (especially useful for sourceforge urls for conifer and bwa) --- eval/tools/bpipe/0.9.9.6/bpipe.config | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/eval/tools/bpipe/0.9.9.6/bpipe.config b/eval/tools/bpipe/0.9.9.6/bpipe.config index e809c20..daf0dc2 100644 --- a/eval/tools/bpipe/0.9.9.6/bpipe.config +++ b/eval/tools/bpipe/0.9.9.6/bpipe.config @@ -19,7 +19,7 @@ tools { install = """ mkdir -p tools/bwa cd tools/bwa - curl -o bwa.tar.bz2 'http://internode.dl.sourceforge.net/project/bio-bwa/bwa-0.7.12.tar.bz2' + curl -L -o bwa.tar.bz2 'http://internode.dl.sourceforge.net/project/bio-bwa/bwa-0.7.12.tar.bz2' tar -xjf bwa.tar.bz2 cd bwa-* make @@ -43,7 +43,7 @@ tools { install = """ mkdir -p tools/xhmm cd tools/xhmm - curl -o master.zip https://bitbucket.org/statgen/xhmm/get/master.zip + curl -L -o master.zip https://bitbucket.org/statgen/xhmm/get/master.zip unzip -o master.zip mv statgen* trunk cd trunk @@ -105,7 +105,7 @@ tools { install = """ mkdir -p tools/conifer cd tools/conifer - curl -o 'conifer-0.2.2.tar.gz' 'http://internode.dl.sourceforge.net/project/conifer/CoNIFER%200.2.2/conifer_v0.2.2.tar.gz' + curl -L -o 'conifer-0.2.2.tar.gz' 'http://internode.dl.sourceforge.net/project/conifer/CoNIFER%200.2.2/conifer_v0.2.2.tar.gz' tar -xzf conifer-0.2.2.tar.gz mv conifer_v0.2.2 0.2.2 """