using vgene vs vfamily

[spencerseale]

Hello,

When I used full vgene information for v_masking I received a lot of NA values without any error/warning messages about incompatibility. When I ran again with just vfamily annotation for v_masking it resulted in all Pgen values as expected. Is there any reason that you can think of that may be causing this? Love this tool thank you for your help.

[giulioisac]

Hello Spencer,

Can you send us a print of the v genes associated to those NA values? Normally the problem arises when those genes are not present in the list of genes of the model files: https://github.com/statbiophys/OLGA/blob/master/olga/default_models/human_T_beta/model_params.txt

Bests,
Giulio