advanced users - array/data frame inputs when loading a model #2
Description
I will mostly use OLGA as importable package, but I have one issue by doing this. I still need to specify the model params and marginals files as well as the cdr3 anchor index files. In my package I will have to write my anchor files to csv first and specify the file location to OLGA's internal classes. Afterwards I'll have to delete the written csv files. Not optimal...
It would be very nice to be able to give these functions some sort of the data structure (numpy arrays or even a pandas data frame). In this scenario, the command line tool would have a utility function to parse the data files first into a table structure that is in turn handed over to the internal classes. Much more practical when extending this code.
Cheers, Wout