Skip to content

使用network.pip基于MAGs丰度计算时出现报错 #29

@quliping

Description

@quliping

您好,我有一个丰度表格是基于MAGs比对得到的RPKM值得到的丰度表格,我将其作为OTU表格输入,但是计算中途出现报错,请问是怎么回事呢?
这是我的命令:
`tab.r_all = network.pip(
ps = ps_all,
N = 0,

ra = 0.05,

big = TRUE,
select_layout = FALSE,
layout_net = "model_maptree2",
#layout_net = "model_igraph2",
r.threshold = 0.6,
p.threshold = 0.05,
maxnode = 2,
method = "sparcc",
label = FALSE,
lab = "elements",
group = "Group",
fill = "phylum",
size = "igraph.degree",
zipi = TRUE,
ram.net = TRUE,
clu_method = "cluster_fast_greedy",
step = 100,
R=10,
ncpus = 4
)`
这是报错:
Image
0.
这是我的输入文件:
taxonomy.txt
abundance.txt
metadata.txt

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions