No module named 'straw'

[SSHH007]

Hello Tariks,

I run into the problem "No module named 'straw'", although I have installed hicstraw. What package do I miss? Many thanks.

sshh

[jgoodson]

It appears that straw refers to https://github.com/aidenlab/straw although the current versions of the hic-straw PyPI package installs as hicstraw and not straw. I was able to work around this by installing hic-straw from PyPI and manually changing all instances of import straw in this package to import hicstraw as straw. This appeared to successfully complete a full training run on the training dataset in the readme.

I expect this has something to do with refactoring of some package(s) which this program depends on. This package should probably specify the specific straw package version it has a dependency on in the package setup, although there may be more appropriate solutions. It appears from a quick inspection that version 1.0.0 of hic-straw changed the module name, meaning installing version 0.0.6 (the prior version on PyPI) might be what is expected here, although I am not sure how this dependency would have previously been brought in with the install procedure described in the readme. Installing hic-straw==0.0.6 also allowed the program to run, without any further modification.

[SSHH007]

Thanks. the problem was solved.

[SSHH007]

thank you very much.

…

On Wed, Jan 3, 2024 at 8:30 AM Jonathan Goodson ***@***.***> wrote: It appears that straw refers to https://github.com/aidenlab/straw although the current versions of the hic-straw PyPI package <https://pypi.org/project/hic-straw/> installs as hicstraw and not straw. I was able to work around this by installing hic-straw from PyPI and manually changing all instances of import straw in this package to import hicstraw as straw. This appeared to successfully complete a full training run on the training dataset in the readme. I expect this has something to do with refactoring of some package(s) which this program depends on. This package should probably specify the specific straw package version it has a dependency on in the package setup, although there may be more appropriate solutions. It appears from a quick inspection that version 1.0.0 of hic-straw changed the module name, meaning installing version 0.0.6 (the prior version on PyPI) might be what is expected here, although I am not sure how this dependency would have previously been brought in with the install procedure described in the readme. — Reply to this email directly, view it on GitHub <#24 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AH6AF6Q7WHHTJF6MB3UABDLYMVMPLAVCNFSM6AAAAABBKZJEZSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQNZVGM3TKMRXGQ> . You are receiving this because you authored the thread.Message ID: ***@***.***>