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While trying to run a workflow in which in tune a hier_clust model I am receiving:
Error in
check_grid()at tidyclust/R/tune_cluster.R:165:3:
! The providedgridhas parameter column 'activation' that has not been marked for tuning bytune().
Which as the error states it's due to the fact that a parameter with identifier "activation" it's showing up in the grid, as you can see in the output of print(param_grid) of the following reprex:
install.packages(c("tidyclust", "dials", "parsnip"))
#> Installing packages into 'x/renv/library/windows/R-4.5/x86_64-w64-mingw32'
#> (as 'lib' is unspecified)
#> package 'tidyclust' successfully unpacked and MD5 sums checked
#> package 'dials' successfully unpacked and MD5 sums checked
#> package 'parsnip' successfully unpacked and MD5 sums checked
#>
#> The downloaded binary packages are in
#> C:\Users\x\AppData\Local\Temp\Rtmp2PKsV8\downloaded_packages
library(tidyclust)
library(dials)
#> Loading required package: scales
library(parsnip)
#>
#> Attaching package: 'parsnip'
#> The following objects are masked from 'package:tidyclust':
#>
#> knit_engine_docs, list_md_problems
# Define the model with all tunable parameters
model <- hier_clust(
num_clusters = tune(),
linkage_method = tune()
) |>
set_engine("stats") |>
set_mode("partition")
# Define the parameter grid
param_grid <- dials::parameters(
num_clusters(range = c(2, 3)),
linkage_method(values = values_linkage_method)
)
# Show model and parameters
print(model)
#> Hierarchical Clustering Specification (partition)
#>
#> Main Arguments:
#> num_clusters = tune()
#> linkage_method = tune()
#>
#> Computational engine: stats
print(param_grid)
#> Collection of 2 parameters for tuning
#>
#> identifier type object
#> num_clusters num_clusters nparam[+]
#> activation activation dparam[+]
#> I think this issue it's related to linkage_method due to that when I remove linkage_method tuning it works:
install.packages(c("tidyclust", "dials", "parsnip"))
#> Installing packages into 'x/renv/library/windows/R-4.5/x86_64-w64-mingw32'
#> (as 'lib' is unspecified)
#> package 'tidyclust' successfully unpacked and MD5 sums checked
#> package 'dials' successfully unpacked and MD5 sums checked
#> package 'parsnip' successfully unpacked and MD5 sums checked
#>
#> The downloaded binary packages are in
#> C:\Users\x\AppData\Local\Temp\Rtmp2PKsV8\downloaded_packages
library(tidyclust)
library(dials)
#> Loading required package: scales
library(parsnip)
#>
#> Attaching package: 'parsnip'
#> The following objects are masked from 'package:tidyclust':
#>
#> knit_engine_docs, list_md_problems
# Define the model with all tunable parameters
model <- hier_clust(
num_clusters = tune() # ,
# linkage_method = tune()
) |>
set_engine("stats") |>
set_mode("partition")
# Define the parameter grid
param_grid <- dials::parameters(
num_clusters(range = c(2, 3)) # ,
# linkage_method(values = values_linkage_method)
)
# Show model and parameters
print(model)
#> Hierarchical Clustering Specification (partition)
#>
#> Main Arguments:
#> num_clusters = tune()
#> linkage_method = complete
#>
#> Computational engine: stats
print(param_grid)
#> Collection of 1 parameters for tuning
#>
#> identifier type object
#> num_clusters num_clusters nparam[+]
#> Metadata
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