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Merge pull request #7 from tidytranscriptomics-workshops/stemangiola-patch-1
rearrange info on README
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README.md

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<img style="height:100px;" alt="tidybulk" src="https://github.com/Bioconductor/BiocStickers/blob/master/tidybulk/tidybulk.png?raw=true"/>
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</p>
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## Instructor names and contact information
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## Workshop Description
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* Maria Doyle <Maria.Doyle at petermac.org>
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* Stefano Mangiola <mangiola.s at wehi.edu.au>
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This tutorial will present how to perform analysis of single-cell RNA sequencing data following the tidy data paradigm. The tidy data paradigm provides a standard way to organise data values within a dataset, where each variable is a column, each observation is a row, and data is manipulated using an easy-to-understand vocabulary. Most importantly, the data structure remains consistent across manipulation and analysis functions.
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## Syllabus
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This can be achieved with the integration of packages present in the R CRAN and Bioconductor ecosystem, including [tidySingleCellExperiment](https://stemangiola.github.io/tidySingleCellExperiment/) and [tidyverse](https://www.tidyverse.org/). These packages are part of the tidytranscriptomics suite that introduces a tidy approach to RNA sequencing data representation and analysis. For more information see the [tidy transcriptomics blog](https://stemangiola.github.io/tidytranscriptomics/).
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### Pre-requisites
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* Basic familiarity with single-cell transcriptomic analyses
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* Basic familiarity with tidyverse
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## Workshop goals
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Material [web page](https://tidytranscriptomics-workshops.github.io/bioc2022_tidytranscriptomics/articles/tidytranscriptomics_case_study.html).
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* To approach single-cell data representation and analysis though a tidy data paradigm, integrating tidyverse with tidySingleCellExperiment.
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* Compare SingleCellExperiment and tidy representation
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* Apply tidy functions to SingleCellExperiment objects
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* Reproduce a real-world case study that showcases the power of tidy single-cell methods
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More details on the workshop are below.
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### What you will learn
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* Basic tidy operations possible with tidySingleCellExperiment
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* The differences between SingleCellExperiment representation and tidy representation
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* How to interface SingleCellExperiment with tidy manipulation and visualisation
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* A real-world case study that will showcase the power of tidy single-cell methods compared with base/ad-hoc methods
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### What you will not learn
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* The molecular technology of single-cell sequencing
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* The fundamentals of single-cell data analysis
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* The fundamentals of tidy data analysis
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### Workshop Participation
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The workshop format is a 1.5 hour session consisting of hands-on demos, exercises and Q&A.
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## Syllabus
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Material [web page](https://tidytranscriptomics-workshops.github.io/bioc2022_tidytranscriptomics/articles/tidytranscriptomics_case_study.html). More details on the workshop are below.
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## Workshop package installation
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To run the code, you could then copy and paste the code from the workshop vignette or [R markdown file](https://raw.githubusercontent.com/tidytranscriptomics-workshops/bioc2022_tidytranscriptomics/master/vignettes/tidytranscriptomics.Rmd) into a new R Markdown file on your computer.
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## Workshop Description
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This tutorial will present how to perform analysis of single-cell RNA sequencing data following the tidy data paradigm. The tidy data paradigm provides a standard way to organise data values within a dataset, where each variable is a column, each observation is a row, and data is manipulated using an easy-to-understand vocabulary. Most importantly, the data structure remains consistent across manipulation and analysis functions.
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This can be achieved with the integration of packages present in the R CRAN and Bioconductor ecosystem, including [tidySingleCellExperiment](https://stemangiola.github.io/tidySingleCellExperiment/) and [tidyverse](https://www.tidyverse.org/). These packages are part of the tidytranscriptomics suite that introduces a tidy approach to RNA sequencing data representation and analysis. For more information see the [tidy transcriptomics blog](https://stemangiola.github.io/tidytranscriptomics/).
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### Pre-requisites
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* Basic familiarity with single-cell transcriptomic analyses
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* Basic familiarity with tidyverse
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### Workshop Participation
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The workshop format is a 1.5 hour session consisting of hands-on demos, exercises and Q&A.
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## Workshop goals and objectives
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### Learning goals
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* To approach single-cell data representation and analysis though a tidy data paradigm, integrating tidyverse with tidySingleCellExperiment.
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### Learning objectives
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* Compare SingleCellExperiment and tidy representation
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* Apply tidy functions to SingleCellExperiment objects
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* Reproduce a real-world case study that showcases the power of tidy single-cell methods
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### What you will learn
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* Basic tidy operations possible with tidySingleCellExperiment
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* The differences between SingleCellExperiment representation and tidy representation
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* How to interface SingleCellExperiment with tidy manipulation and visualisation
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* A real-world case study that will showcase the power of tidy single-cell methods compared with base/ad-hoc methods
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## Instructor names and contact information
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### What you will not learn
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* Maria Doyle <Maria.Doyle at petermac.org>
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* Stefano Mangiola <mangiola.s at wehi.edu.au>
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* The molecular technology of single-cell sequencing
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* The fundamentals of single-cell data analysis
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* The fundamentals of tidy data analysis

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