Bug - Function csu_ageSpecific_top not returning data frame variable

[YasCoMa]

Hello,

The function csu_ageSpecific_top works correctly however besides the generated plot, it has an empty output instead of the dataframe.

This behavior can be observed using the commands of the bioconductor documentation section containing the examples.

[timat35]

Hi,

I can not reproduced the issue. For me this packages is not link to "bioconductor" or I'm not aware of.. Could you share the example using it, so I can see what is happening ?

[YasCoMa]

Here is the example (from Rcan documentation):

library(Rcan)
data("csu_CI5XII_data")

#remove all cancers:
df_data <- subset(csu_CI5XII_data ,cancer_code < 62)
df_data$sex <- factor(df_data$sex, levels=c(1,2), labels=c("Male", "Female"))

#select Thailand changmai
df_data_1 <- subset(df_data, id_code==476400199)

# plot for Thailand Changmai
dt_result_1 <- csu_ageSpecific_top(df_data_1,
var_age="age",
var_cases="cases",
var_py="py",
var_top="cancer_label",
group_by="sex",
plot_title= "Thailand, Chiangmai",
plot_subtitle = "Top 5 cancer",
missing_age = 19)

#select USAm NPCR
df_data_2 <- subset(df_data,id_code== 384008099)

# plot for USA NPCR
dt_result_2 <- csu_ageSpecific_top(
df_data_2,
var_age="age",
var_cases="cases",
var_py="py",
var_top="cancer_label",
group_by="sex",
plot_title= "USA",
plot_subtitle = "Top 5 cancer",
missing_age = 19
)

The dt_result_1 and dt_result_2 variables are empty but they should receive the data table

[timat35]

I've check, the dt_result_1 is not empty. see screenshot