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laceysandersonlaceysanderson
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Initialize a basic site.
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‎.gitignore‎

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_site
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.sass-cache
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.jekyll-cache
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.jekyll-metadata
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vendor

‎404.html‎

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---
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permalink: /404.html
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layout: default
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---
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<style type="text/css" media="screen">
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.container {
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margin: 10px auto;
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max-width: 600px;
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text-align: center;
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}
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h1 {
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margin: 30px 0;
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font-size: 4em;
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line-height: 1;
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letter-spacing: -1px;
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}
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</style>
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<div class="container">
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<h1>404</h1>
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<p><strong>Page not found :(</strong></p>
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<p>The requested page could not be found.</p>
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</div>

‎Gemfile‎

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source "https://rubygems.org"
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gem "jekyll", "~> 4.3.0"
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gem "bulma-clean-theme", '1.0.0'
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group :jekyll_plugins do
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gem "jekyll-feed", "~> 0.12"
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gem "jekyll-sitemap"
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gem "jekyll-paginate"
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gem "jekyll-seo-tag"
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gem 'jekyll-redirect-from'
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end
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gem "http_parser.rb", "~> 0.6.0", :platforms => [:jruby]

‎Gemfile.lock‎

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GEM
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remote: https://rubygems.org/
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specs:
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addressable (2.8.7)
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public_suffix (>= 2.0.2, < 7.0)
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bigdecimal (3.2.2)
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bulma-clean-theme (1.0.0)
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jekyll (>= 4.3, < 5.0)
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jekyll-feed (~> 0.15)
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jekyll-paginate (~> 1.1)
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jekyll-seo-tag (~> 2.7)
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jekyll-sitemap (~> 1.4)
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kramdown-parser-gfm (~> 1.1)
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colorator (1.1.0)
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concurrent-ruby (1.3.5)
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em-websocket (0.5.3)
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eventmachine (>= 0.12.9)
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http_parser.rb (~> 0)
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eventmachine (1.2.7)
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ffi (1.17.2)
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ffi (1.17.2-aarch64-linux-gnu)
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ffi (1.17.2-aarch64-linux-musl)
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ffi (1.17.2-arm-linux-gnu)
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ffi (1.17.2-arm-linux-musl)
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ffi (1.17.2-arm64-darwin)
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ffi (1.17.2-x86-linux-gnu)
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ffi (1.17.2-x86-linux-musl)
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ffi (1.17.2-x86_64-darwin)
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ffi (1.17.2-x86_64-linux-gnu)
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ffi (1.17.2-x86_64-linux-musl)
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forwardable-extended (2.6.0)
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google-protobuf (4.31.1)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.31.1-aarch64-linux-gnu)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.31.1-aarch64-linux-musl)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.31.1-arm64-darwin)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.31.1-x86-linux-gnu)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.31.1-x86-linux-musl)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.31.1-x86_64-darwin)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.31.1-x86_64-linux-gnu)
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bigdecimal
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rake (>= 13)
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google-protobuf (4.31.1-x86_64-linux-musl)
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bigdecimal
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rake (>= 13)
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http_parser.rb (0.8.0)
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i18n (1.14.7)
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concurrent-ruby (~> 1.0)
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jekyll (4.3.4)
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addressable (~> 2.4)
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colorator (~> 1.0)
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em-websocket (~> 0.5)
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i18n (~> 1.0)
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jekyll-sass-converter (>= 2.0, < 4.0)
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jekyll-watch (~> 2.0)
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kramdown (~> 2.3, >= 2.3.1)
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kramdown-parser-gfm (~> 1.0)
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liquid (~> 4.0)
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mercenary (>= 0.3.6, < 0.5)
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pathutil (~> 0.9)
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rouge (>= 3.0, < 5.0)
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safe_yaml (~> 1.0)
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terminal-table (>= 1.8, < 4.0)
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webrick (~> 1.7)
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jekyll-feed (0.17.0)
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jekyll (>= 3.7, < 5.0)
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jekyll-paginate (1.1.0)
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jekyll-redirect-from (0.16.0)
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jekyll (>= 3.3, < 5.0)
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jekyll-sass-converter (3.1.0)
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sass-embedded (~> 1.75)
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jekyll-seo-tag (2.8.0)
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jekyll (>= 3.8, < 5.0)
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jekyll-sitemap (1.4.0)
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jekyll (>= 3.7, < 5.0)
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jekyll-watch (2.2.1)
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listen (~> 3.0)
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kramdown (2.5.1)
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rexml (>= 3.3.9)
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kramdown-parser-gfm (1.1.0)
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kramdown (~> 2.0)
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liquid (4.0.4)
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listen (3.9.0)
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rb-fsevent (~> 0.10, >= 0.10.3)
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rb-inotify (~> 0.9, >= 0.9.10)
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mercenary (0.4.0)
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pathutil (0.16.2)
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forwardable-extended (~> 2.6)
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public_suffix (6.0.2)
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rake (13.3.0)
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rb-fsevent (0.11.2)
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rb-inotify (0.11.1)
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ffi (~> 1.0)
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rexml (3.4.1)
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rouge (4.6.0)
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safe_yaml (1.0.5)
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sass-embedded (1.90.0)
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google-protobuf (~> 4.31)
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rake (>= 13)
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sass-embedded (1.90.0-aarch64-linux-android)
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google-protobuf (~> 4.31)
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sass-embedded (1.90.0-aarch64-linux-gnu)
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google-protobuf (~> 4.31)
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sass-embedded (1.90.0-aarch64-linux-musl)
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google-protobuf (~> 4.31)
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sass-embedded (1.90.0-arm-linux-androideabi)
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google-protobuf (~> 4.31)
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sass-embedded (1.90.0-arm-linux-gnueabihf)
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google-protobuf (~> 4.31)
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sass-embedded (1.90.0-arm-linux-musleabihf)
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google-protobuf (~> 4.31)
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sass-embedded (1.90.0-arm64-darwin)
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google-protobuf (~> 4.31)
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sass-embedded (1.90.0-riscv64-linux-android)
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google-protobuf (~> 4.31)
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sass-embedded (1.90.0-riscv64-linux-gnu)
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google-protobuf (~> 4.31)
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sass-embedded (1.90.0-riscv64-linux-musl)
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google-protobuf (~> 4.31)
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sass-embedded (1.90.0-x86_64-darwin)
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google-protobuf (~> 4.31)
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sass-embedded (1.90.0-x86_64-linux-android)
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google-protobuf (~> 4.31)
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sass-embedded (1.90.0-x86_64-linux-gnu)
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google-protobuf (~> 4.31)
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sass-embedded (1.90.0-x86_64-linux-musl)
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google-protobuf (~> 4.31)
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terminal-table (3.0.2)
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unicode-display_width (>= 1.1.1, < 3)
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unicode-display_width (2.6.0)
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webrick (1.9.1)
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PLATFORMS
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aarch64-linux-android
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aarch64-linux-gnu
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aarch64-linux-musl
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arm-linux-androideabi
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arm-linux-gnu
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arm-linux-gnueabihf
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arm-linux-musl
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arm-linux-musleabihf
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arm64-darwin
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riscv64-linux-android
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riscv64-linux-gnu
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riscv64-linux-musl
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ruby
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x86-linux-gnu
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x86-linux-musl
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x86_64-darwin
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x86_64-linux-android
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x86_64-linux-gnu
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x86_64-linux-musl
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DEPENDENCIES
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bulma-clean-theme (= 1.0.0)
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http_parser.rb (~> 0.6.0)
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jekyll (~> 4.3.0)
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jekyll-feed (~> 0.12)
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jekyll-paginate
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jekyll-redirect-from
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jekyll-seo-tag
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jekyll-sitemap
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BUNDLED WITH
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2.7.1

‎_config.yml‎

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# Site Settings
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lang: en
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title: Tripal
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tagline: An open-source toolkit for construction of genomic, genetic, breeding and biological databases.
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description: >- # this means to ignore newlines until "baseurl:"
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Tripal is a toolkit for construction of online biological (genetics, genomics, breeding, etc), community database, and is a member of the GMOD family of tools. Tripal provides by default integration with the GMOD Chado database schema and Drupal, a popular Content Management Systems (CMS). Tripal is licensed under the GNU General Public License version 2.
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Genomics, genetics, breeding and other biological data are increasingly complicated and time consuming to publish online for other researchers to search, browse and make discoveries. Tripal provides a framework to reduce the complexity of creating such a site, and provides access to a community of similar groups that share community-standards, and interact to address questions and learn best practices for sharing, storing and visualizing complex biological data.
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baseurl: ""
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url: ""
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permalink: pretty
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github_username: tripal
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#favicon: /path/to/favicon.png
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#gh_sponsor: githubusername
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#hide_share_buttons: true
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#theme_color: '#eeeeee'
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#fixed_navbar: top
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#direction: one of <ltr, rtl, auto>, default: ltr
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force_theme: light
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theme: bulma-clean-theme
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paginate: 5
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paginate_path: "/blog/page:num"
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# Disqus Comments
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disqus:
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# Leave shortname blank to disable comments site-wide.
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# Disable comments for any post by adding `comments: false` to that post's YAML Front Matter.
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# shortname: my_disqus_shortname
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shortname:
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plugins:
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- jekyll-sitemap
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- jekyll-paginate
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- jekyll-feed
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- jekyll-seo-tag
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- kramdown-parser-gfm
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- jekyll-redirect-from
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exclude:
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- Gemfile
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- clean-theme.gemspec
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- Gemfile.lock
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- node_modules
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- vendor/bundle/
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- vendor/cache/
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- vendor/gems/
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- vendor/ruby/
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livereload: true

‎_posts/2025-08-14-welcome-to-jekyll.markdown‎

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---
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layout: post
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title: "Welcome to Jekyll!"
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date: 2025-08-14 02:44:31 +0000
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categories: jekyll update
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---
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You’ll find this post in your `_posts` directory. Go ahead and edit it and re-build the site to see your changes. You can rebuild the site in many different ways, but the most common way is to run `jekyll serve`, which launches a web server and auto-regenerates your site when a file is updated.
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Jekyll requires blog post files to be named according to the following format:
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`YEAR-MONTH-DAY-title.MARKUP`
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Where `YEAR` is a four-digit number, `MONTH` and `DAY` are both two-digit numbers, and `MARKUP` is the file extension representing the format used in the file. After that, include the necessary front matter. Take a look at the source for this post to get an idea about how it works.
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Jekyll also offers powerful support for code snippets:
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{% highlight ruby %}
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def print_hi(name)
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puts "Hi, #{name}"
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end
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print_hi('Tom')
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#=> prints 'Hi, Tom' to STDOUT.
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{% endhighlight %}
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Check out the [Jekyll docs][jekyll-docs] for more info on how to get the most out of Jekyll. File all bugs/feature requests at [Jekyll’s GitHub repo][jekyll-gh]. If you have questions, you can ask them on [Jekyll Talk][jekyll-talk].
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[jekyll-docs]: https://jekyllrb.com/docs/home
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[jekyll-gh]: https://github.com/jekyll/jekyll
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[jekyll-talk]: https://talk.jekyllrb.com/

‎index.md‎

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---
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title: Tripal
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subtitle: An open-source toolkit for construction of genomic, genetic, breeding and biological databases.
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layout: page
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callouts: home_callouts
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show_sidebar: true
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---
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There will be content here eventually.

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