Merge pull request #58 from trz42/pull_in_fixes_PR238_PR239

pull in fixes from EESSI/software-layer PR238 and PR239

Author: poksumdo

EESSI-pilot-install-software.sh

@@ -177,10 +177,6 @@ else
     eb --install-latest-eb-release &> ${eb_install_out}
     check_exit_code $? "${ok_msg}" "${fail_msg}"
 
-    # restore origin $PATH and $PYTHONPATH values
-    export PATH=${ORIG_PATH}
-    export PYTHONPATH=${ORIG_PYTHONPATH}
-
     eb --search EasyBuild-${REQ_EB_VERSION}.eb | grep EasyBuild-${REQ_EB_VERSION}.eb > /dev/null
     if [[ $? -eq 0 ]]; then
         ok_msg="EasyBuild v${REQ_EB_VERSION} installed, alright!"
@@ -189,6 +185,10 @@ else
         check_exit_code $? "${ok_msg}" "${fail_msg}"
     fi
 
+    # restore origin $PATH and $PYTHONPATH values
+    export PATH=${ORIG_PATH}
+    export PYTHONPATH=${ORIG_PYTHONPATH}
+
     module avail easybuild/${REQ_EB_VERSION} &> ${ml_av_easybuild_out}
     if [[ $? -eq 0 ]]; then
         echo_green ">> EasyBuild module installed!"

create_tarball.sh

@@ -38,6 +38,7 @@ cd ${overlay_upper_dir}/versions/
 echo ">> Collecting list of files/directories to include in tarball via ${PWD}..."
 
 files_list=${tmpdir}/files.list.txt
+module_files_list=${tmpdir}/module_files.list.txt
 
 if [ -d ${pilot_version}/software/${os}/${cpu_arch_subdir}/.lmod ]; then
     # include Lmod cache and configuration file (lmodrc.lua),
@@ -49,12 +50,26 @@ if [ -d ${pilot_version}/software/${os}/${cpu_arch_subdir}/modules ]; then
     find ${pilot_version}/software/${os}/${cpu_arch_subdir}/modules -type f | grep -v '/\.wh\.' >> ${files_list}
     # module symlinks
     find ${pilot_version}/software/${os}/${cpu_arch_subdir}/modules -type l | grep -v '/\.wh\.' >> ${files_list}
+    # module files and symlinks
+    find ${pilot_version}/software/${os}/${cpu_arch_subdir}/modules/all -type f -o -type l \
+        | grep -v '/\.wh\.' | sed -e 's/.lua$//' | awk -F'/' '{printf "%s/%s\n", $(NF-1), $NF}' | sort | uniq \
+        >> ${module_files_list}
 fi
-if [ -d ${pilot_version}/software/${os}/${cpu_arch_subdir}/software ]; then
-    # installation directories
-    ls -d ${pilot_version}/software/${os}/${cpu_arch_subdir}/software/*/* | grep -v '/\.wh\.' >> ${files_list}
+if [ -d ${pilot_version}/software/${os}/${cpu_arch_subdir}/software -a -r ${module_files_list} ]; then
+    # installation directories but only those for which module files were created
+    for package_version in $(cat ${module_files_list}); do
+        echo "handling ${package_version}"
+        ls -d ${pilot_version}/software/${os}/${cpu_arch_subdir}/software/${package_version} \
+            | grep -v '/\.wh\.' >> ${files_list}
+    done
 fi
 
+# add a bit debug output
+echo "wrote file list to ${files_list}"
+[ -r ${files_list} ] && cat ${files_list}
+echo "wrote module file list to ${module_files_list}"
+[ -r ${module_files_list} ] && cat ${module_files_list}
+
 topdir=${cvmfs_repo}/versions/
 
 echo ">> Creating tarball ${target_tgz} from ${topdir}..."