From 4c9b6da185443e772773e82325b07b486371ccb4 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Fri, 10 Apr 2026 13:30:28 +0200 Subject: [PATCH 01/38] Create rdm_tools.qmd --- topics/rdm_tools.qmd | 1 + 1 file changed, 1 insertion(+) create mode 100644 topics/rdm_tools.qmd diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd new file mode 100644 index 000000000..8b1378917 --- /dev/null +++ b/topics/rdm_tools.qmd @@ -0,0 +1 @@ + From e882c082ff3270fef8e1c43198db9e99d80257e2 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Fri, 10 Apr 2026 13:47:09 +0200 Subject: [PATCH 02/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 8b1378917..434624a95 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -1 +1,4 @@ - +--- +title: RDM Tools +categories: [] +--- From 7035074662d6d2ffae87167b03bf6761c615d0ea Mon Sep 17 00:00:00 2001 From: DukmakD Date: Fri, 10 Apr 2026 14:22:12 +0200 Subject: [PATCH 03/38] Enhance RDM tools documentation with introductory text Added introductory content about RDM tools and support. --- topics/rdm_tools.qmd | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 434624a95..c4803ef60 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -2,3 +2,9 @@ title: RDM Tools categories: [] --- + +The Vrije Universiteit Amsterdam hosts a wide range of research data management (RDM) tools designed for researchers to support researchers throughout their enitre project lifecycle. + +Whether you are starting your data management plan, collecting data or looking for long-term storage solutions, RDM tools help you optimize your research process and make data handling efficient. + +Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) is availible to provide you with the guidance throughout your entire project ligecycle. From e822566aeeb20e768bd9a014a96e4c741c4d5462 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 13:02:18 +0200 Subject: [PATCH 04/38] Add category 'Research Software' to RDM Tools --- topics/rdm_tools.qmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index c4803ef60..8a2a24741 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -1,6 +1,6 @@ --- title: RDM Tools -categories: [] +categories: [Research Software] --- The Vrije Universiteit Amsterdam hosts a wide range of research data management (RDM) tools designed for researchers to support researchers throughout their enitre project lifecycle. From 298f701066ce8e0bb91d5f11458728a42b44af3a Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 13:05:45 +0200 Subject: [PATCH 05/38] Change category from 'Research Software' to 'All' --- topics/rdm_tools.qmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 8a2a24741..e2f5c1097 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -1,6 +1,6 @@ --- title: RDM Tools -categories: [Research Software] +categories: [All] --- The Vrije Universiteit Amsterdam hosts a wide range of research data management (RDM) tools designed for researchers to support researchers throughout their enitre project lifecycle. From bf9de20f84ad496e15c5471602b57108b0918a09 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 13:18:48 +0200 Subject: [PATCH 06/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index e2f5c1097..8a2a24741 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -1,6 +1,6 @@ --- title: RDM Tools -categories: [All] +categories: [Research Software] --- The Vrije Universiteit Amsterdam hosts a wide range of research data management (RDM) tools designed for researchers to support researchers throughout their enitre project lifecycle. From 785ac7573299961d1ae250113d291de6d5ffc6e2 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 14:00:18 +0200 Subject: [PATCH 07/38] Enhance RDM tools section with computing resources Added section on RDM tools for computational analysis with links. --- topics/rdm_tools.qmd | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 8a2a24741..ef60e5170 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -8,3 +8,19 @@ The Vrije Universiteit Amsterdam hosts a wide range of research data management Whether you are starting your data management plan, collecting data or looking for long-term storage solutions, RDM tools help you optimize your research process and make data handling efficient. Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) is availible to provide you with the guidance throughout your entire project ligecycle. + +## RDM tools + +
+ +Computing + +There are several tools availible to support researchers in performing computational analysis and processing data efficiently: +- [ADA](https://rdm.vu.nl/tools/ada/index.html) +- [Nebula](https://rdm.vu.nl/tools/nebula/index.html) +- [Research Cloud](https://rdm.vu.nl/tools/researchcloud/index.html) +- [SciCloud](https://rdm.vu.nl/tools/scicloud/index.html) +- [Snellius](https://rdm.vu.nl/tools/snellius/index.html) +- [VU Compute hub](https://rdm.vu.nl/tools/vucomputehub/index.html) + +
From ad27a338aca277ca4d2b4bdca0ddae36997c7774 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 14:04:42 +0200 Subject: [PATCH 08/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index ef60e5170..aa69bfa0a 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -17,10 +17,16 @@ Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) There are several tools availible to support researchers in performing computational analysis and processing data efficiently: - [ADA](https://rdm.vu.nl/tools/ada/index.html) + - [Nebula](https://rdm.vu.nl/tools/nebula/index.html) + - [Research Cloud](https://rdm.vu.nl/tools/researchcloud/index.html) + - [SciCloud](https://rdm.vu.nl/tools/scicloud/index.html) + - [Snellius](https://rdm.vu.nl/tools/snellius/index.html) + - [VU Compute hub](https://rdm.vu.nl/tools/vucomputehub/index.html) + From 14489e58e6ec9b725ba889760941a58e29a50019 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 14:05:46 +0200 Subject: [PATCH 09/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index aa69bfa0a..e62d2ff32 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -15,7 +15,7 @@ Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) Computing -There are several tools availible to support researchers in performing computational analysis and processing data efficiently: +There are several tools available to support researchers in performing computational analysis and processing data efficiently: - [ADA](https://rdm.vu.nl/tools/ada/index.html) - [Nebula](https://rdm.vu.nl/tools/nebula/index.html) From 94c36c7098887c484c0fd93ce2c1536eaf16777f Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 14:07:08 +0200 Subject: [PATCH 10/38] Add tools for computational analysis in rdm_tools.qmd Added links to ADA and Nebula tools for computational analysis. --- topics/rdm_tools.qmd | 1 + 1 file changed, 1 insertion(+) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index e62d2ff32..1f9f49c33 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -16,6 +16,7 @@ Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) Computing There are several tools available to support researchers in performing computational analysis and processing data efficiently: + - [ADA](https://rdm.vu.nl/tools/ada/index.html) - [Nebula](https://rdm.vu.nl/tools/nebula/index.html) From 97f8f1953282e8fb00a9f327f8955985874a23c5 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 14:12:26 +0200 Subject: [PATCH 11/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 1f9f49c33..57448dd35 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -13,7 +13,7 @@ Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl)
-Computing +Computing There are several tools available to support researchers in performing computational analysis and processing data efficiently: From a07efa670a14922d82722956e9b5d9182df2035c Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 14:27:47 +0200 Subject: [PATCH 12/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 57448dd35..d92d35a43 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -17,7 +17,7 @@ Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) There are several tools available to support researchers in performing computational analysis and processing data efficiently: -- [ADA](https://rdm.vu.nl/tools/ada/index.html) +- [ADA](https://rdm.vu.nl/tools/ada/index.html) is designed by VU and is beneficial when your research requires more computational power than a standard laptop or workstation. It offers access to multi-core CPUs, large-memory nodes, and batch GPU capacity for effiecient large-scale data processing and analysis. - [Nebula](https://rdm.vu.nl/tools/nebula/index.html) From 779fcea84cce939a69ed744e2d9112abca31eaaf Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 15:29:01 +0200 Subject: [PATCH 13/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index d92d35a43..b36ea2c0a 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -19,11 +19,11 @@ There are several tools available to support researchers in performing computati - [ADA](https://rdm.vu.nl/tools/ada/index.html) is designed by VU and is beneficial when your research requires more computational power than a standard laptop or workstation. It offers access to multi-core CPUs, large-memory nodes, and batch GPU capacity for effiecient large-scale data processing and analysis. -- [Nebula](https://rdm.vu.nl/tools/nebula/index.html) +- [Nebula](https://rdm.vu.nl/tools/nebula/index.html) is developed to support researchers who want to use AI models in their work. It provides researchers across all departments with safe and semaless access to open-source langugae models (LLMs). Nebula is fully hosted on VU premises ensuring that no data leaves the campus. -- [Research Cloud](https://rdm.vu.nl/tools/researchcloud/index.html) +- [Research Cloud](https://rdm.vu.nl/tools/researchcloud/index.html) is a SURF-hosted portal that allows you to easily build or reuse a virtual research environment. It enables you to run one or more servers with applications that are accessible over the internet. -- [SciCloud](https://rdm.vu.nl/tools/scicloud/index.html) +- [SciCloud](https://rdm.vu.nl/tools/scicloud/index.html) - [Snellius](https://rdm.vu.nl/tools/snellius/index.html) From 8cdf3771c1a413396e0fe12d51e6899818754cb9 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 15:37:16 +0200 Subject: [PATCH 14/38] Update descriptions for RDM tools in documentation --- topics/rdm_tools.qmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index b36ea2c0a..42f5b21d3 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -23,9 +23,9 @@ There are several tools available to support researchers in performing computati - [Research Cloud](https://rdm.vu.nl/tools/researchcloud/index.html) is a SURF-hosted portal that allows you to easily build or reuse a virtual research environment. It enables you to run one or more servers with applications that are accessible over the internet. -- [SciCloud](https://rdm.vu.nl/tools/scicloud/index.html) +- [SciCloud](https://rdm.vu.nl/tools/scicloud/index.html) is based on the open-source middleware OpenNebula (ONE) and allows researchers to purchase server capacity to support their research applications. -- [Snellius](https://rdm.vu.nl/tools/snellius/index.html) +- [Snellius](https://rdm.vu.nl/tools/snellius/index.html) is a SURF-hosted service designed for large-scale experiments, such as simulations and modelling, that require significant computing power. - [VU Compute hub](https://rdm.vu.nl/tools/vucomputehub/index.html) From 7034d71272e24287d0ae35af71bd4f826bc83348 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 15:41:39 +0200 Subject: [PATCH 15/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 42f5b21d3..560be90f9 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -27,7 +27,6 @@ There are several tools available to support researchers in performing computati - [Snellius](https://rdm.vu.nl/tools/snellius/index.html) is a SURF-hosted service designed for large-scale experiments, such as simulations and modelling, that require significant computing power. -- [VU Compute hub](https://rdm.vu.nl/tools/vucomputehub/index.html) - +- [VU Compute hub](https://rdm.vu.nl/tools/vucomputehub/index.html) is a JupyterHub service hosted by IT that is primarily intended for educational use, but is also available to VU researchers who need a low-threshold environment for running analyses.
From a4803680a8ea72f933a586b6d14ba0462930724d Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 15:53:35 +0200 Subject: [PATCH 16/38] Revise RDM tools section and add data archiving tools Updated section headers and added details for data archiving tools. --- topics/rdm_tools.qmd | 16 +++++++++++++++- 1 file changed, 15 insertions(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 560be90f9..2ebc32677 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -13,7 +13,7 @@ Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl)
-Computing +Computing Tools There are several tools available to support researchers in performing computational analysis and processing data efficiently: @@ -30,3 +30,17 @@ There are several tools available to support researchers in performing computati - [VU Compute hub](https://rdm.vu.nl/tools/vucomputehub/index.html) is a JupyterHub service hosted by IT that is primarily intended for educational use, but is also available to VU researchers who need a low-threshold environment for running analyses.
+ + +
+ +Data Archiving Tools + +There are several tools available to support researchers in archiving data efficiently: + +- [DataverseNL](https://rdm.vu.nl/tools/dataversenl/index.html) is an open access platform hosted by DANS for archiving and publishing research datasets. DataverseNl is not suitable for data files containing personl or confidential data. For archiving and publishing sensitive data, researchers should consider Yoda. + +- [Yoda](https://rdm.vu.nl/tools/yoda/index.html) is developed by Utrecht University and hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. + + +
From bca0c7d15f084888d7a60908a8df8c4e4e498692 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 16:01:26 +0200 Subject: [PATCH 17/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 2ebc32677..f7b9dd020 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -43,4 +43,16 @@ There are several tools available to support researchers in archiving data effic - [Yoda](https://rdm.vu.nl/tools/yoda/index.html) is developed by Utrecht University and hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. + + + +
+ +Data Management Plan Tools + +There are several tools available to support researchers in archiving data efficiently: + +- [DMPonline](https://rdm.vu.nl/tools/dmponline/) is an online platform that enables researchers to create, manage, and share Data Management Plans. The platform provides structured templates to help researchers address key aspects of the research lifecycle, including legal and ethical requirements, storage, preservation, documentation, and responsibilities. + +
From 626ccbe6fb268cb1c84592b2c0af79f5ce0aa746 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 16:21:30 +0200 Subject: [PATCH 18/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 17 +++++++++++++++-- 1 file changed, 15 insertions(+), 2 deletions(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index f7b9dd020..1d37cf21b 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -50,9 +50,22 @@ There are several tools available to support researchers in archiving data effic Data Management Plan Tools -There are several tools available to support researchers in archiving data efficiently: - - [DMPonline](https://rdm.vu.nl/tools/dmponline/) is an online platform that enables researchers to create, manage, and share Data Management Plans. The platform provides structured templates to help researchers address key aspects of the research lifecycle, including legal and ethical requirements, storage, preservation, documentation, and responsibilities. + + +
+ +Data Publishing Tools + +There are several tools available to support researchers in publishing data efficiently: + +- [DataverseNL](https://rdm.vu.nl/tools/dataversenl/index.html) is an open access platform hosted by DANS for archiving and publishing research datasets. DataverseNl is not suitable for data files containing personl or confidential data. For archiving and publishing sensitive data, researchers should consider Yoda. + +- [OSF](https://rdm.vu.nl/tools/osf/index.html) is a SURF-hosted portal that allows you to easily build or reuse a virtual research environment. It enables you to run one or more servers with applications that are accessible over the internet. + +- [Yoda](https://rdm.vu.nl/tools/yoda/index.html) is developed by Utrecht University and hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. + +
From 805889724af0877549f0786feb394b3160007d3b Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 16:26:13 +0200 Subject: [PATCH 19/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 1d37cf21b..ea7d97fb5 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -64,7 +64,7 @@ There are several tools available to support researchers in publishing data effi - [DataverseNL](https://rdm.vu.nl/tools/dataversenl/index.html) is an open access platform hosted by DANS for archiving and publishing research datasets. DataverseNl is not suitable for data files containing personl or confidential data. For archiving and publishing sensitive data, researchers should consider Yoda. -- [OSF](https://rdm.vu.nl/tools/osf/index.html) is a SURF-hosted portal that allows you to easily build or reuse a virtual research environment. It enables you to run one or more servers with applications that are accessible over the internet. +- [OSF](https://rdm.vu.nl/tools/osf/index.html) is a cloud-based, open-source tool that supports researchers throughout the active research stage. It facilitates collaboration and connects services, materials, and other research objects for private use or public sharing. - [Yoda](https://rdm.vu.nl/tools/yoda/index.html) is developed by Utrecht University and hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. From 62ad10d8a7b17b17157c76e2a38f3d3ddfb34758 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 16:38:17 +0200 Subject: [PATCH 20/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 18 +++++++++++++++++- 1 file changed, 17 insertions(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index ea7d97fb5..ba120ad1c 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -7,7 +7,7 @@ The Vrije Universiteit Amsterdam hosts a wide range of research data management Whether you are starting your data management plan, collecting data or looking for long-term storage solutions, RDM tools help you optimize your research process and make data handling efficient. -Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) is availible to provide you with the guidance throughout your entire project ligecycle. +Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) is available to provide you with the guidance throughout your entire project ligecycle. ## RDM tools @@ -69,3 +69,19 @@ There are several tools available to support researchers in publishing data effi - [Yoda](https://rdm.vu.nl/tools/yoda/index.html) is developed by Utrecht University and hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. + + +
+ +Data Storage Tools + +There are several tools available to support researchers in storing data efficiently: + +- [Research Drive](https://rdm.vu.nl/tools/researchdrive/index.html)is a SURF-hosted online storage and collaboration platform for research data. It allows researchers to easily store and share files with others, both within and outside VU Amsterdam. Research Drive is a cloud storage platform that requires downloading data using Nextcloud to a local device for analysis. + +- [SciStore](https://rdm.vu.nl/tools/scistor/index.html) is an IT-hosted data storage service designed for storing large volumes of research data on campus. It provides high-speed connections to lab equipment, laptops, and workstations. + +- [Yoda](https://rdm.vu.nl/tools/yoda/index.html) is developed by Utrecht University and hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. + +
+ From cc1117d8cf94c0842eb17a560d6c850d36dfc869 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Mon, 13 Apr 2026 16:47:07 +0200 Subject: [PATCH 21/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index ba120ad1c..6da0dad36 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -85,3 +85,13 @@ There are several tools available to support researchers in storing data efficie + +
+ +Lab Journal Tools + +- [SciSure](https://rdm.vu.nl/tools/scisure/index.html) is an application that supports researchers in documenting experiments and results in a digital lab journal.It can be used to track results and share data recorded during experiments within an electronic lab notebook. + + +
+ From 457350786fe1eca28cc34bef6ce0bb5aec674d14 Mon Sep 17 00:00:00 2001 From: Elisa-on-GitHub <78543806+Elisa-on-GitHub@users.noreply.github.com> Date: Mon, 13 Apr 2026 16:54:14 +0200 Subject: [PATCH 22/38] fixing typos --- topics/rdm_tools.qmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 6da0dad36..4a72d0610 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -38,7 +38,7 @@ There are several tools available to support researchers in performing computati There are several tools available to support researchers in archiving data efficiently: -- [DataverseNL](https://rdm.vu.nl/tools/dataversenl/index.html) is an open access platform hosted by DANS for archiving and publishing research datasets. DataverseNl is not suitable for data files containing personl or confidential data. For archiving and publishing sensitive data, researchers should consider Yoda. +- [DataverseNL](https://rdm.vu.nl/tools/dataversenl/index.html) is a data repository hosted by DANS for archiving and publishing research datasets. DataverseNL is not suitable for data files containing personal or confidential data. For archiving and publishing sensitive data, researchers should consider using Yoda. - [Yoda](https://rdm.vu.nl/tools/yoda/index.html) is developed by Utrecht University and hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. From 94ba5e69c27a3972a5c0ecbc3cb90591f1adb32e Mon Sep 17 00:00:00 2001 From: DukmakD Date: Thu, 16 Apr 2026 10:51:27 +0200 Subject: [PATCH 23/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 43 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 43 insertions(+) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 4a72d0610..6221a1310 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -95,3 +95,46 @@ There are several tools available to support researchers in storing data efficie +
+ +Online Surveys Tools + +- [Qualtrics](https://rdm.vu.nl/tools/qualtrics/index.html) is a cloud-based survey platform that enables users to create and manage online surveys. It supports a variety of (complex) survey design requirements. VU’s Qualtrics licence is intended for scientific research purposes only, including data collection and management. + +
+ +
+ +Plagiarism Detection Tools + +- [iThenticate](https://rdm.vu.nl/tools/ithenticate/index.html) is plagiarism detection software offered by Turnitin that compares a researcher’s work with published academic sources and bibliographic databases such as Crossref. At VU, plagiarism checks are used primarily in an educational and preventative way, with the aim of raising awareness of scientific integrity rather than focusing on retrospective detection. +
+ +
+ +Preregistration Tools + +- [OSF](https://rdm.vu.nl/tools/osf/index.html) is a cloud-based, open-source tool that supports researchers throughout the active research stage. It facilitates collaboration and connects services, materials, and other research objects for private use or public sharing. + +
+ +
+ +Research Output Registration Tools + +- [Pure](https://rdm.vu.nl/tools/pure/index.html) is the Current Research Information System (CRIS) used at VU, serving as the central platform for registering and managing all research activities and outputs, including publications, datasets, and projects. + +
+ +
+ +Virtual Research Environment Tools + +There are several tools available to support researchers in building and using virtual research environments efficiently: + +- [Research Cloud](https://rdm.vu.nl/tools/researchcloud/index.html) + +- [SciCloud](https://rdm.vu.nl/tools/scicloud/index.html) + +
+ From c608988b5881bc3e904ad561e685fdff22692d8b Mon Sep 17 00:00:00 2001 From: DukmakD Date: Thu, 16 Apr 2026 11:06:10 +0200 Subject: [PATCH 24/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 6221a1310..b89261bd3 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -1,6 +1,6 @@ --- title: RDM Tools -categories: [Research Software] +categories: [Knowledge Items] --- The Vrije Universiteit Amsterdam hosts a wide range of research data management (RDM) tools designed for researchers to support researchers throughout their enitre project lifecycle. From 33f2fa19f2d8e8f2ec1a8721ae5a06cd5f24a854 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Thu, 16 Apr 2026 11:18:31 +0200 Subject: [PATCH 25/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index b89261bd3..ede9bc7e2 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -77,7 +77,7 @@ There are several tools available to support researchers in publishing data effi There are several tools available to support researchers in storing data efficiently: -- [Research Drive](https://rdm.vu.nl/tools/researchdrive/index.html)is a SURF-hosted online storage and collaboration platform for research data. It allows researchers to easily store and share files with others, both within and outside VU Amsterdam. Research Drive is a cloud storage platform that requires downloading data using Nextcloud to a local device for analysis. +- [Research Drive](https://rdm.vu.nl/tools/researchdrive/index.html) is a SURF-hosted online storage and collaboration platform for research data. It allows researchers to easily store and share files with others, both within and outside VU Amsterdam. Research Drive is a cloud storage platform that requires downloading data using Nextcloud to a local device for analysis. - [SciStore](https://rdm.vu.nl/tools/scistor/index.html) is an IT-hosted data storage service designed for storing large volumes of research data on campus. It provides high-speed connections to lab equipment, laptops, and workstations. @@ -132,9 +132,9 @@ There are several tools available to support researchers in storing data efficie There are several tools available to support researchers in building and using virtual research environments efficiently: -- [Research Cloud](https://rdm.vu.nl/tools/researchcloud/index.html) +- [Research Cloud](https://rdm.vu.nl/tools/researchcloud/index.html) is a SURF-hosted portal that allows you to easily build or reuse a virtual research environment. It enables you to run one or more servers with applications that are accessible over the internet. -- [SciCloud](https://rdm.vu.nl/tools/scicloud/index.html) +- [SciCloud](https://rdm.vu.nl/tools/scicloud/index.html) is based on the open-source middleware OpenNebula (ONE) and allows researchers to purchase server capacity to support their research applications. From 39968fa5450a8df9c5310c8f6b96400fde600fbc Mon Sep 17 00:00:00 2001 From: DukmakD Date: Thu, 16 Apr 2026 11:21:24 +0200 Subject: [PATCH 26/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index ede9bc7e2..a18da2a2b 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -7,7 +7,7 @@ The Vrije Universiteit Amsterdam hosts a wide range of research data management Whether you are starting your data management plan, collecting data or looking for long-term storage solutions, RDM tools help you optimize your research process and make data handling efficient. -Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) is available to provide you with the guidance throughout your entire project ligecycle. +Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) is available to provide you with the guidance throughout your entire project lifecycle. ## RDM tools From c92906c076e56532a206c97fff876e59c7a1161d Mon Sep 17 00:00:00 2001 From: Jolien-S <142608800+Jolien-S@users.noreply.github.com> Date: Thu, 16 Apr 2026 12:07:43 +0200 Subject: [PATCH 27/38] Update rdm_tools.qmd * Added transfer tools * Added transcription tools * Added code development tools * Included reference to storage finder * Moved reference to RDM Support Desk to separate section * Included section tool not listed --- topics/rdm_tools.qmd | 47 ++++++++++++++++++++++++++++++++++++++++---- 1 file changed, 43 insertions(+), 4 deletions(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index a18da2a2b..bd45bc649 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -5,14 +5,22 @@ categories: [Knowledge Items] The Vrije Universiteit Amsterdam hosts a wide range of research data management (RDM) tools designed for researchers to support researchers throughout their enitre project lifecycle. -Whether you are starting your data management plan, collecting data or looking for long-term storage solutions, RDM tools help you optimize your research process and make data handling efficient. - -Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) is available to provide you with the guidance throughout your entire project lifecycle. +Whether you are starting your data management plan, collecting data or looking for long-term storage solutions, RDM tools help you optimise your research process and make data handling efficient. ## RDM tools
+Code Development Tools + +VU Amsterdam has a GitLab instance in which you can collaboratorively work on code: + +- [GitLab](https://gitlab.vu.nl) is a code repository for **research use**; features include version control and the possibility to collaborate. Maintained by the University Library. There is also a [gitlab server for general use](https://git.vu.nl). + +
+ +
+ Computing Tools There are several tools available to support researchers in performing computational analysis and processing data efficiently: @@ -75,7 +83,7 @@ There are several tools available to support researchers in publishing data effi Data Storage Tools -There are several tools available to support researchers in storing data efficiently: +There are several tools available to support researchers in storing data efficiently. The [Data Storage Finder](https://vu.nl/en/research/storagefinder) can help you decide which tools fits your situation best. - [Research Drive](https://rdm.vu.nl/tools/researchdrive/index.html) is a SURF-hosted online storage and collaboration platform for research data. It allows researchers to easily store and share files with others, both within and outside VU Amsterdam. Research Drive is a cloud storage platform that requires downloading data using Nextcloud to a local device for analysis. @@ -85,6 +93,17 @@ There are several tools available to support researchers in storing data efficie
+
+ +File Transfer Tools + +A storage platform that allows (external) sharing is the easiest way to share data with others working on your project. This is possible with [Yoda]() and [Research Drive]() (with VU-internal and external colleagues) and with [SciStor]() (only with VU colleagues). However, sometimes you might need to send data to a third party as a one-off. Regular email is not suitable for sending sensitive data, but there are alternatives: + +- [SURFfilesender](https://filesender.surf.nl/?s=home) is a web-based application that allows authenticated users to securely and easily send arbitrarily large files to other users. Users without an account can be sent a guest upload voucher by an authenticated user. SURFfilesender is developed to the requirements of the higher education and research community. + +- [Zivver](https://www.zivver.com/products/email-encryption-software) offers a secure way to send (large) files. With Zivver, you can encrypt your emails and attachments up to 5TB. This is available to all VU employees. You can find information on how to use Zivver in πŸ”’ [the VU service portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0012157). Encrypted email and file transfer with attachments up to 5TB. + +
@@ -128,6 +147,18 @@ There are several tools available to support researchers in storing data efficie
+Transcription Tools + +VU Amsterdam has agreements with two transcription services for converting speech in audio or video files to text: + +- [Transcript Online](../topics/transcription.qmd) offers human-edited transcription. Experienced transcribers convert speech into both verbatim and literal transcriptions. This is a paid service. + +- [Amberscript](../topics/transcription.qmd) offers both automated transcription and human-edited transcription. Human-edited transcriptions can be done verbatim or literal. This is a paid service. + +
+ +
+ Virtual Research Environment Tools There are several tools available to support researchers in building and using virtual research environments efficiently: @@ -138,3 +169,11 @@ There are several tools available to support researchers in building and using v
+## Choosing a Tool + +Which tool is most suitable for your research can vary, depending on what kind of functionality you're looking for, what sort of data you're dealing with, or whether you need to share data with external partners. Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) is available to provide you with the guidance throughout your entire project lifecycle. + +## Tool Not Listed? + +If you need a research tool that isn't provided by VU Amsterdam, you can contact the RDM Support Desk at [rdm@vu.nl](mailto:rdm@vu.nl) to discuss your requirements. We can suggest an alternative or forward your question to the IT or the procurement team. + From 124e5623c086ce116d4876775bd8231835ead372 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Thu, 23 Apr 2026 11:06:34 +0200 Subject: [PATCH 28/38] Update rdm_tools.qmd --- topics/rdm_tools.qmd | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index bd45bc649..027d72b4e 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -169,6 +169,22 @@ There are several tools available to support researchers in building and using v
+
+ +Data Analysis Toosl + +VU Amsterdam provides licences for several data analysis tools. +You can find more information on working with data in [the VU libguide](https://libguides.vu.nl/working-with-data/introduction) +If you have any questions about the tools listed below, you can contact the [IT Servicedesk](mailto:servicedesk.it@vu.nl): + +- [Atlas ti](https://atlasti.com/) is a qualitative data analysis software that supports coding, text interpretation and multimedia analysis. Atlas.ti provides [video tutorials] (https://atlasti.com/video-tutorials) to help users get started. + +- [SPSS] + +- [Matlab] + +- [Stata] +
## Choosing a Tool Which tool is most suitable for your research can vary, depending on what kind of functionality you're looking for, what sort of data you're dealing with, or whether you need to share data with external partners. Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) is available to provide you with the guidance throughout your entire project lifecycle. From 5fb92c4c87df30fcb2ff60297f661dbc00a4cd1a Mon Sep 17 00:00:00 2001 From: DukmakD Date: Thu, 23 Apr 2026 15:34:49 +0200 Subject: [PATCH 29/38] Fix typos and enhance formatting in rdm_tools.qmd Corrected typos and improved formatting in the data analysis tools section. --- topics/rdm_tools.qmd | 12 +++++++----- 1 file changed, 7 insertions(+), 5 deletions(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 027d72b4e..c97fac2bc 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -174,16 +174,18 @@ There are several tools available to support researchers in building and using v Data Analysis Toosl VU Amsterdam provides licences for several data analysis tools. -You can find more information on working with data in [the VU libguide](https://libguides.vu.nl/working-with-data/introduction) -If you have any questions about the tools listed below, you can contact the [IT Servicedesk](mailto:servicedesk.it@vu.nl): +You can find more information on working with data in [the VU Libguide](https://libguides.vu.nl/working-with-data/introduction). + +If you have any questions about the tools listed below, you can contact the [IT Servicedesk](mailto:servicedesk.it@vu.nl). - [Atlas ti](https://atlasti.com/) is a qualitative data analysis software that supports coding, text interpretation and multimedia analysis. Atlas.ti provides [video tutorials] (https://atlasti.com/video-tutorials) to help users get started. -- [SPSS] +- [SPSS](https://www.surfspot.nl/vu) is a quantitative statistical analysis software package used for data management, statistical analysis, and data visualization. There are [free tutroials](https://resultnetsearch.com/?dn=how2stats.net&sksubid=44786252&_slsen=0) availible to help users get started. You can find more in-depth, paid tutorials [here](https://statistics.laerd.com/). + +- [Matlab](https://www.mathworks.com/academia/tah-portal/vrije-universiteit-amsterdam-30688271.html) is a programming language for numerical analysis, data visualization, and algorithm development. -- [Matlab] +- [Stata](https://www.scienceplus.com/nl/statistiek/stata/?gad_source=1&gad_campaignid=251688141&gbraid=0AAAAAD_cwtmYS8azW8JFKlpADJ1WIR2yy&gclid=CjwKCAjwhqfPBhBWEiwAZo196pDjD5tymxrHz163VRmksMh8P6zM_YzEYpkzFDHlnssDHcKBoeMKEBoCRh4QAvD_BwE) is a statisitcal package used for quantitative data analysis. More information and tutorials can be found in [the VU Libguide](https://libguides.vu.nl/working-with-data/software/stata-sources). -- [Stata] ## Choosing a Tool From 89c36cd57a8abdd14c42bd9eb9c078da617f5b96 Mon Sep 17 00:00:00 2001 From: DukmakD Date: Thu, 23 Apr 2026 15:36:07 +0200 Subject: [PATCH 30/38] Fix typo in Stata description in rdm_tools.qmd --- topics/rdm_tools.qmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index c97fac2bc..53c81afa3 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -184,7 +184,7 @@ If you have any questions about the tools listed below, you can contact the [IT - [Matlab](https://www.mathworks.com/academia/tah-portal/vrije-universiteit-amsterdam-30688271.html) is a programming language for numerical analysis, data visualization, and algorithm development. -- [Stata](https://www.scienceplus.com/nl/statistiek/stata/?gad_source=1&gad_campaignid=251688141&gbraid=0AAAAAD_cwtmYS8azW8JFKlpADJ1WIR2yy&gclid=CjwKCAjwhqfPBhBWEiwAZo196pDjD5tymxrHz163VRmksMh8P6zM_YzEYpkzFDHlnssDHcKBoeMKEBoCRh4QAvD_BwE) is a statisitcal package used for quantitative data analysis. More information and tutorials can be found in [the VU Libguide](https://libguides.vu.nl/working-with-data/software/stata-sources). +- [Stata](https://www.scienceplus.com/nl/statistiek/stata/?gad_source=1&gad_campaignid=251688141&gbraid=0AAAAAD_cwtmYS8azW8JFKlpADJ1WIR2yy&gclid=CjwKCAjwhqfPBhBWEiwAZo196pDjD5tymxrHz163VRmksMh8P6zM_YzEYpkzFDHlnssDHcKBoeMKEBoCRh4QAvD_BwE) is a statistical package used for quantitative data analysis. More information and tutorials can be found in [the VU Libguide](https://libguides.vu.nl/working-with-data/software/stata-sources). ## Choosing a Tool From 23282d312082ff0adee1919046332898aa3a966f Mon Sep 17 00:00:00 2001 From: Jolien-S <142608800+Jolien-S@users.noreply.github.com> Date: Thu, 30 Apr 2026 09:55:40 +0200 Subject: [PATCH 31/38] Changed URLs to qmd files, fixed typos --- topics/rdm_tools.qmd | 60 ++++++++++++++++++++++---------------------- 1 file changed, 30 insertions(+), 30 deletions(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 53c81afa3..ad37f11ac 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -25,17 +25,17 @@ VU Amsterdam has a GitLab instance in which you can collaboratorively work on co There are several tools available to support researchers in performing computational analysis and processing data efficiently: -- [ADA](https://rdm.vu.nl/tools/ada/index.html) is designed by VU and is beneficial when your research requires more computational power than a standard laptop or workstation. It offers access to multi-core CPUs, large-memory nodes, and batch GPU capacity for effiecient large-scale data processing and analysis. +- [ADA](/tools/ada/index.qmd) is designed by VU and is beneficial when your research requires more computational power than a standard laptop or workstation. It offers access to multi-core CPUs, large-memory nodes, and batch GPU capacity for effiecient large-scale data processing and analysis. -- [Nebula](https://rdm.vu.nl/tools/nebula/index.html) is developed to support researchers who want to use AI models in their work. It provides researchers across all departments with safe and semaless access to open-source langugae models (LLMs). Nebula is fully hosted on VU premises ensuring that no data leaves the campus. +- [Nebula](/tools/nebula/index.qmd) is developed to support researchers who want to use AI models in their work. It provides researchers across all departments with safe and seamless access to open-source large langugae models (LLMs). Nebula is fully hosted on VU premises ensuring that no data leaves the campus. -- [Research Cloud](https://rdm.vu.nl/tools/researchcloud/index.html) is a SURF-hosted portal that allows you to easily build or reuse a virtual research environment. It enables you to run one or more servers with applications that are accessible over the internet. +- [Research Cloud](/tools/researchcloud/index.qmd) is a SURF-hosted portal that allows you to easily build or reuse a virtual research environment. It enables you to run one or more servers with applications that are accessible over the internet. -- [SciCloud](https://rdm.vu.nl/tools/scicloud/index.html) is based on the open-source middleware OpenNebula (ONE) and allows researchers to purchase server capacity to support their research applications. +- [SciCloud](/tools/scicloud/index.qmd) is offered by IT for Research ([ITvO](topics/itvo.qmd)) and is based on the open-source middleware OpenNebula (ONE). It allows researchers to purchase server capacity to support their research applications. -- [Snellius](https://rdm.vu.nl/tools/snellius/index.html) is a SURF-hosted service designed for large-scale experiments, such as simulations and modelling, that require significant computing power. +- [Snellius](/tools/snellius/index.qmd) is a SURF-hosted service designed for large-scale experiments, such as simulations and modelling, that require significant computing power. -- [VU Compute hub](https://rdm.vu.nl/tools/vucomputehub/index.html) is a JupyterHub service hosted by IT that is primarily intended for educational use, but is also available to VU researchers who need a low-threshold environment for running analyses. +- [VU Compute hub](/tools/vucomputehub/index.qmd) is a JupyterHub service hosted by IT that is primarily intended for educational use, but is also available to VU researchers who need a low-threshold environment for running analyses. @@ -44,11 +44,11 @@ There are several tools available to support researchers in performing computati Data Archiving Tools -There are several tools available to support researchers in archiving data efficiently: +There are several tools available to support researchers in archiving their data: -- [DataverseNL](https://rdm.vu.nl/tools/dataversenl/index.html) is a data repository hosted by DANS for archiving and publishing research datasets. DataverseNL is not suitable for data files containing personal or confidential data. For archiving and publishing sensitive data, researchers should consider using Yoda. +- [DataverseNL](/tools/dataversenl/index.qmd) is a data repository hosted by DANS for archiving and publishing research datasets. DataverseNL is not suitable for data files containing personal or confidential data. For archiving and publishing sensitive data, researchers should use Yoda. -- [Yoda](https://rdm.vu.nl/tools/yoda/index.html) is developed by Utrecht University and hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. +- [Yoda](/tools/yoda/index.qmd) is a data storage platform and repository hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. @@ -58,7 +58,7 @@ There are several tools available to support researchers in archiving data effic Data Management Plan Tools -- [DMPonline](https://rdm.vu.nl/tools/dmponline/) is an online platform that enables researchers to create, manage, and share Data Management Plans. The platform provides structured templates to help researchers address key aspects of the research lifecycle, including legal and ethical requirements, storage, preservation, documentation, and responsibilities. +- [DMPonline](/tools/dmponline/index.qmd) is an online platform that enables researchers to create, manage, and share Data Management Plans. The platform provides structured templates to help researchers address key aspects of the research lifecycle, including legal and ethical requirements, storage, preservation, documentation, and responsibilities. @@ -68,13 +68,13 @@ There are several tools available to support researchers in archiving data effic Data Publishing Tools -There are several tools available to support researchers in publishing data efficiently: +There are several tools available to support researchers in publishing data: -- [DataverseNL](https://rdm.vu.nl/tools/dataversenl/index.html) is an open access platform hosted by DANS for archiving and publishing research datasets. DataverseNl is not suitable for data files containing personl or confidential data. For archiving and publishing sensitive data, researchers should consider Yoda. +- [DataverseNL](/tools/dataversenl/index.qmd) is an open access platform hosted by Data Archiving and Networked Services (DANS) for archiving and publishing research datasets. DataverseNL is not suitable for data files containing personl or confidential data. For archiving and publishing sensitive data, researchers should use Yoda. -- [OSF](https://rdm.vu.nl/tools/osf/index.html) is a cloud-based, open-source tool that supports researchers throughout the active research stage. It facilitates collaboration and connects services, materials, and other research objects for private use or public sharing. +- [OSF](/tools/osf/index.qmd) is a cloud-based, open-source tool that supports researchers throughout the **active research stage**. It facilitates collaboration and connects services, materials, and other research objects for private use or public sharing. -- [Yoda](https://rdm.vu.nl/tools/yoda/index.html) is developed by Utrecht University and hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. +- [Yoda](/tools/yoda/index.qmd) is a data storage platform and repository hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. @@ -83,13 +83,13 @@ There are several tools available to support researchers in publishing data effi Data Storage Tools -There are several tools available to support researchers in storing data efficiently. The [Data Storage Finder](https://vu.nl/en/research/storagefinder) can help you decide which tools fits your situation best. +There are several tools available to support researchers in storing data efficiently. The [Data Storage Finder](https://vu.nl/en/research/storagefinder) can help you decide which tools fit your situation best. -- [Research Drive](https://rdm.vu.nl/tools/researchdrive/index.html) is a SURF-hosted online storage and collaboration platform for research data. It allows researchers to easily store and share files with others, both within and outside VU Amsterdam. Research Drive is a cloud storage platform that requires downloading data using Nextcloud to a local device for analysis. +- [Research Drive](/tools/researchdrive/index.qmd) is a SURF-hosted online storage and collaboration platform for research data. It allows researchers to easily store and share files with others, both within and outside VU Amsterdam. Research Drive is a cloud storage platform that requires downloading data using Nextcloud to a local device for analysis. -- [SciStore](https://rdm.vu.nl/tools/scistor/index.html) is an IT-hosted data storage service designed for storing large volumes of research data on campus. It provides high-speed connections to lab equipment, laptops, and workstations. +- [SciStor](/tools/scistor/index.qmd) is an IT-hosted data storage service designed for storing large volumes of research data on campus. It provides high-speed connections to lab equipment, laptops, and workstations. -- [Yoda](https://rdm.vu.nl/tools/yoda/index.html) is developed by Utrecht University and hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. +- [Yoda](/tools/yoda/index.qmd) is a data storage platform and repository hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. @@ -97,7 +97,7 @@ There are several tools available to support researchers in storing data efficie File Transfer Tools -A storage platform that allows (external) sharing is the easiest way to share data with others working on your project. This is possible with [Yoda]() and [Research Drive]() (with VU-internal and external colleagues) and with [SciStor]() (only with VU colleagues). However, sometimes you might need to send data to a third party as a one-off. Regular email is not suitable for sending sensitive data, but there are alternatives: +A storage platform that allows (external) sharing is the easiest way to share data with others working on your project. This is possible with [Yoda](/tools/yoda/index.qmd) and [Research Drive](/tools/researchdrive/index.qmd) (with VU-internal and external colleagues) and with [SciStor](/tools/scistor/index.qmd) (only with VU colleagues). However, sometimes you might need to send data to a third party as a one-off. Regular email is not suitable for sending sensitive data, but there are alternatives: - [SURFfilesender](https://filesender.surf.nl/?s=home) is a web-based application that allows authenticated users to securely and easily send arbitrarily large files to other users. Users without an account can be sent a guest upload voucher by an authenticated user. SURFfilesender is developed to the requirements of the higher education and research community. @@ -109,7 +109,7 @@ A storage platform that allows (external) sharing is the easiest way to share da Lab Journal Tools -- [SciSure](https://rdm.vu.nl/tools/scisure/index.html) is an application that supports researchers in documenting experiments and results in a digital lab journal.It can be used to track results and share data recorded during experiments within an electronic lab notebook. +- [SciSure](/tools/scisure/index.qmd) is an application that supports researchers in documenting experiments and results in a digital lab journal. It can be used to track results and share data recorded during experiments within an electronic lab notebook. @@ -118,7 +118,7 @@ A storage platform that allows (external) sharing is the easiest way to share da Online Surveys Tools -- [Qualtrics](https://rdm.vu.nl/tools/qualtrics/index.html) is a cloud-based survey platform that enables users to create and manage online surveys. It supports a variety of (complex) survey design requirements. VU’s Qualtrics licence is intended for scientific research purposes only, including data collection and management. +- [Qualtrics](/tools/qualtrics/index.qmd) is a cloud-based survey platform that enables users to create and manage online surveys. It supports a variety of (complex) survey design requirements. VU’s Qualtrics licence is intended for scientific research purposes only, including data collection and management. @@ -126,14 +126,14 @@ A storage platform that allows (external) sharing is the easiest way to share da Plagiarism Detection Tools -- [iThenticate](https://rdm.vu.nl/tools/ithenticate/index.html) is plagiarism detection software offered by Turnitin that compares a researcher’s work with published academic sources and bibliographic databases such as Crossref. At VU, plagiarism checks are used primarily in an educational and preventative way, with the aim of raising awareness of scientific integrity rather than focusing on retrospective detection. +- [iThenticate](/tools/ithenticate/index.qmd) is plagiarism detection software offered by Turnitin that compares a researcher’s work with published academic sources and bibliographic databases such as Crossref. At VU Amsterdam, plagiarism checks are used primarily in an educational and preventative way, with the aim of raising awareness of scientific integrity rather than focusing on retrospective detection.
Preregistration Tools -- [OSF](https://rdm.vu.nl/tools/osf/index.html) is a cloud-based, open-source tool that supports researchers throughout the active research stage. It facilitates collaboration and connects services, materials, and other research objects for private use or public sharing. +- [OSF](/tools/osf/index.qmd) is a cloud-based, open-source tool that supports researchers throughout the **active research stage**. It facilitates collaboration and connects services, materials, and other research objects for private use or public sharing.
@@ -141,7 +141,7 @@ A storage platform that allows (external) sharing is the easiest way to share da Research Output Registration Tools -- [Pure](https://rdm.vu.nl/tools/pure/index.html) is the Current Research Information System (CRIS) used at VU, serving as the central platform for registering and managing all research activities and outputs, including publications, datasets, and projects. +- [Pure](/tools/pure/index.qmd) is the Current Research Information System (CRIS) used at VU, serving as the central platform for registering and managing all research activities and outputs, including publications, datasets, and projects. @@ -163,9 +163,9 @@ VU Amsterdam has agreements with two transcription services for converting speec There are several tools available to support researchers in building and using virtual research environments efficiently: -- [Research Cloud](https://rdm.vu.nl/tools/researchcloud/index.html) is a SURF-hosted portal that allows you to easily build or reuse a virtual research environment. It enables you to run one or more servers with applications that are accessible over the internet. +- [Research Cloud](/tools/researchcloud/index.qmd) is a SURF-hosted portal that allows you to easily build or reuse a virtual research environment. It enables you to run one or more servers with applications that are accessible over the internet. -- [SciCloud](https://rdm.vu.nl/tools/scicloud/index.html) is based on the open-source middleware OpenNebula (ONE) and allows researchers to purchase server capacity to support their research applications. +- [SciCloud](/tools/scicloud/index.qmd) is based on the open-source middleware OpenNebula (ONE) and allows researchers to purchase server capacity to support their research applications. @@ -178,11 +178,11 @@ You can find more information on working with data in [the VU Libguide](https:// If you have any questions about the tools listed below, you can contact the [IT Servicedesk](mailto:servicedesk.it@vu.nl). -- [Atlas ti](https://atlasti.com/) is a qualitative data analysis software that supports coding, text interpretation and multimedia analysis. Atlas.ti provides [video tutorials] (https://atlasti.com/video-tutorials) to help users get started. +- [ATLAS.ti](https://atlasti.com/) is a qualitative data analysis software that supports coding, text interpretation and multimedia analysis. ATLAS.ti provides [video tutorials](https://atlasti.com/video-tutorials) to help users get started. -- [SPSS](https://www.surfspot.nl/vu) is a quantitative statistical analysis software package used for data management, statistical analysis, and data visualization. There are [free tutroials](https://resultnetsearch.com/?dn=how2stats.net&sksubid=44786252&_slsen=0) availible to help users get started. You can find more in-depth, paid tutorials [here](https://statistics.laerd.com/). +- [SPSS](https://www.surfspot.nl/vu) is a quantitative statistical analysis software package used for data management, statistical analysis, and data visualisation. There are [free tutroials](https://resultnetsearch.com/?dn=how2stats.net&sksubid=44786252&_slsen=0) availible to help users get started. You can find more in-depth, paid tutorials [here](https://statistics.laerd.com/). -- [Matlab](https://www.mathworks.com/academia/tah-portal/vrije-universiteit-amsterdam-30688271.html) is a programming language for numerical analysis, data visualization, and algorithm development. +- [MATLAB](https://www.mathworks.com/academia/tah-portal/vrije-universiteit-amsterdam-30688271.html) is a programming language for numerical analysis, data visualisation, and algorithm development. - [Stata](https://www.scienceplus.com/nl/statistiek/stata/?gad_source=1&gad_campaignid=251688141&gbraid=0AAAAAD_cwtmYS8azW8JFKlpADJ1WIR2yy&gclid=CjwKCAjwhqfPBhBWEiwAZo196pDjD5tymxrHz163VRmksMh8P6zM_YzEYpkzFDHlnssDHcKBoeMKEBoCRh4QAvD_BwE) is a statistical package used for quantitative data analysis. More information and tutorials can be found in [the VU Libguide](https://libguides.vu.nl/working-with-data/software/stata-sources). @@ -193,5 +193,5 @@ Which tool is most suitable for your research can vary, depending on what kind o ## Tool Not Listed? -If you need a research tool that isn't provided by VU Amsterdam, you can contact the RDM Support Desk at [rdm@vu.nl](mailto:rdm@vu.nl) to discuss your requirements. We can suggest an alternative or forward your question to the IT or the procurement team. +If you need a research tool that isn't provided by VU Amsterdam, you can contact the RDM Support Desk at [rdm@vu.nl](mailto:rdm@vu.nl) to discuss your requirements. We can suggest an alternative or forward your question to IT or the procurement team. From c13d913da90a865708325b8624367aacd3ca1fa1 Mon Sep 17 00:00:00 2001 From: Jolien-S <142608800+Jolien-S@users.noreply.github.com> Date: Thu, 30 Apr 2026 10:43:35 +0200 Subject: [PATCH 32/38] Added links to service portal for analysis tools --- topics/rdm_tools.qmd | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index ad37f11ac..b7cbc9b32 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -173,18 +173,19 @@ There are several tools available to support researchers in building and using v Data Analysis Toosl -VU Amsterdam provides licences for several data analysis tools. -You can find more information on working with data in [the VU Libguide](https://libguides.vu.nl/working-with-data/introduction). +VU Amsterdam provides licences for several data analysis tools. The different software options provided by IT are described in the πŸ”’ [the VU service portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0012864&table=kb_knowledge&searchTerm=spss). + +You can find more information on working with data in [the VU Libguide 'Working with data'](https://libguides.vu.nl/working-with-data/introduction). If you have any questions about the tools listed below, you can contact the [IT Servicedesk](mailto:servicedesk.it@vu.nl). - [ATLAS.ti](https://atlasti.com/) is a qualitative data analysis software that supports coding, text interpretation and multimedia analysis. ATLAS.ti provides [video tutorials](https://atlasti.com/video-tutorials) to help users get started. -- [SPSS](https://www.surfspot.nl/vu) is a quantitative statistical analysis software package used for data management, statistical analysis, and data visualisation. There are [free tutroials](https://resultnetsearch.com/?dn=how2stats.net&sksubid=44786252&_slsen=0) availible to help users get started. You can find more in-depth, paid tutorials [here](https://statistics.laerd.com/). +- [SPSS](https://www.surfspot.nl/vu) is a quantitative statistical analysis software package used for data management, statistical analysis, and data visualisation. You can find instructions for using the SPSS licence on the πŸ”’ [the VU service portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0022399&table=kb_knowledge&searchTerm=spss). There are [free tutroials](https://resultnetsearch.com/?dn=how2stats.net&sksubid=44786252&_slsen=0) availible to help users get started. You can find more in-depth, paid tutorials [here](https://statistics.laerd.com/). -- [MATLAB](https://www.mathworks.com/academia/tah-portal/vrije-universiteit-amsterdam-30688271.html) is a programming language for numerical analysis, data visualisation, and algorithm development. +- [MATLAB](https://www.mathworks.com/academia/tah-portal/vrije-universiteit-amsterdam-30688271.html) is a programming language for numerical analysis, data visualisation, and algorithm development. You can find instructions for using the MATLAB licence on the πŸ”’ [the VU service portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0011916&table=kb_knowledge&searchTerm=matlab). -- [Stata](https://www.scienceplus.com/nl/statistiek/stata/?gad_source=1&gad_campaignid=251688141&gbraid=0AAAAAD_cwtmYS8azW8JFKlpADJ1WIR2yy&gclid=CjwKCAjwhqfPBhBWEiwAZo196pDjD5tymxrHz163VRmksMh8P6zM_YzEYpkzFDHlnssDHcKBoeMKEBoCRh4QAvD_BwE) is a statistical package used for quantitative data analysis. More information and tutorials can be found in [the VU Libguide](https://libguides.vu.nl/working-with-data/software/stata-sources). +- [Stata](https://www.scienceplus.com/nl/statistiek/stata/?gad_source=1&gad_campaignid=251688141&gbraid=0AAAAAD_cwtmYS8azW8JFKlpADJ1WIR2yy&gclid=CjwKCAjwhqfPBhBWEiwAZo196pDjD5tymxrHz163VRmksMh8P6zM_YzEYpkzFDHlnssDHcKBoeMKEBoCRh4QAvD_BwE) is a statistical package used for quantitative data analysis. Stata is what IT calls 'a specific software package', meaning that it's only available for specific user groups. If you're unsure whether Stata is available for you, we recommend asking someone in your department (e.g. supervisor or head of research group). More information and tutorials can be found in [the VU LibGuide 'Working with data'](https://libguides.vu.nl/working-with-data/software/stata-sources). ## Choosing a Tool From 9bfdb52b136234f0219b48a1f39bb8f3ab43f0b6 Mon Sep 17 00:00:00 2001 From: Jolien-S <142608800+Jolien-S@users.noreply.github.com> Date: Thu, 30 Apr 2026 11:21:27 +0200 Subject: [PATCH 33/38] Add link to video Tools and Services --- topics/rdm_tools.qmd | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index b7cbc9b32..0a013601a 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -192,6 +192,19 @@ If you have any questions about the tools listed below, you can contact the [IT Which tool is most suitable for your research can vary, depending on what kind of functionality you're looking for, what sort of data you're dealing with, or whether you need to share data with external partners. Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) is available to provide you with the guidance throughout your entire project lifecycle. +### Video + +A subset of the tools listed above is highlighted in the video below ([DMPonline](/tools/dmponline/index.qmd), [DataverserNL](/tools/dataversenl/index.qmd), [Yoda](/tools/yoda/index.qmd), [OSF](/tools/osf/index.qmd), [Research Drive](/tools/researchdrive/index.qmd), [SciStor](/tools/scistor/index.qmd)). This is a nice resource if you'd like a quick, visual overview of these tools. + + +
+ +
+ + +### Visual overview + + ## Tool Not Listed? If you need a research tool that isn't provided by VU Amsterdam, you can contact the RDM Support Desk at [rdm@vu.nl](mailto:rdm@vu.nl) to discuss your requirements. We can suggest an alternative or forward your question to IT or the procurement team. From db4f6ab63873d895fe65e96b9100129add71ee19 Mon Sep 17 00:00:00 2001 From: Jolien-S <142608800+Jolien-S@users.noreply.github.com> Date: Thu, 30 Apr 2026 11:31:46 +0200 Subject: [PATCH 34/38] Added image with overview of tools and services --- topics/rdm_tools.qmd | 3 +++ 1 file changed, 3 insertions(+) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 0a013601a..e21ea84e1 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -204,6 +204,9 @@ A subset of the tools listed above is highlighted in the video below ([DMPonline ### Visual overview +The image below lists all services and tools provided by the Network Research Data Support (NeRDS). + +![Overview of services and tools provided by the Network Research Data Support to researchers](../public/nerds-overview-services-tools.jpg) ## Tool Not Listed? From b667c6195a1119f9e067c9f2864afdf26428c7d7 Mon Sep 17 00:00:00 2001 From: Jolien-S <142608800+Jolien-S@users.noreply.github.com> Date: Thu, 30 Apr 2026 12:07:45 +0200 Subject: [PATCH 35/38] Made consistent with PR #527 and added access info where relevant --- topics/rdm_tools.qmd | 34 +++++++++++++++++----------------- 1 file changed, 17 insertions(+), 17 deletions(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index e21ea84e1..f646b239e 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -25,15 +25,15 @@ VU Amsterdam has a GitLab instance in which you can collaboratorively work on co There are several tools available to support researchers in performing computational analysis and processing data efficiently: -- [ADA](/tools/ada/index.qmd) is designed by VU and is beneficial when your research requires more computational power than a standard laptop or workstation. It offers access to multi-core CPUs, large-memory nodes, and batch GPU capacity for effiecient large-scale data processing and analysis. +- [ADA](/tools/ada/index.qmd) is VU's on-campus computing cluster for multi-node computations. ADA is beneficial when your research requires more computational power than a standard laptop or workstation. It offers access to multi-core CPUs, large-memory nodes, and batch GPU capacity for effiecient large-scale data processing and analysis. Account needs to be requested via the VU Service Portal. - [Nebula](/tools/nebula/index.qmd) is developed to support researchers who want to use AI models in their work. It provides researchers across all departments with safe and seamless access to open-source large langugae models (LLMs). Nebula is fully hosted on VU premises ensuring that no data leaves the campus. -- [Research Cloud](/tools/researchcloud/index.qmd) is a SURF-hosted portal that allows you to easily build or reuse a virtual research environment. It enables you to run one or more servers with applications that are accessible over the internet. +- [Research Cloud](/tools/researchcloud/index.qmd) is a SURF-hosted portal that allows you to easily build or reuse a virtual research environment. It enables you to run one or more servers with applications that are accessible over the internet. Requires SRAM collaboration credentials and computing credits. -- [SciCloud](/tools/scicloud/index.qmd) is offered by IT for Research ([ITvO](topics/itvo.qmd)) and is based on the open-source middleware OpenNebula (ONE). It allows researchers to purchase server capacity to support their research applications. +- [SciCloud](/tools/scicloud/index.qmd) is offered by IT for Research ([ITvO](topics/itvo.qmd)) and is based on the open-source middleware OpenNebula (ONE). It allows researchers to purchase server capacity to support their research applications. Good for web applications and 24/7 services. -- [Snellius](/tools/snellius/index.qmd) is a SURF-hosted service designed for large-scale experiments, such as simulations and modelling, that require significant computing power. +- [Snellius](/tools/snellius/index.qmd) is a National Supercomputer hosted by SURF, designed for large-scale experiments, such as simulations and modelling, that require significant computing power. Access can be requested through the VU contract with SURF or through an NWO compute grant. - [VU Compute hub](/tools/vucomputehub/index.qmd) is a JupyterHub service hosted by IT that is primarily intended for educational use, but is also available to VU researchers who need a low-threshold environment for running analyses. @@ -48,7 +48,7 @@ There are several tools available to support researchers in archiving their data - [DataverseNL](/tools/dataversenl/index.qmd) is a data repository hosted by DANS for archiving and publishing research datasets. DataverseNL is not suitable for data files containing personal or confidential data. For archiving and publishing sensitive data, researchers should use Yoda. -- [Yoda](/tools/yoda/index.qmd) is a data storage platform and repository hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. +- [Yoda](/tools/yoda/index.qmd) is a data storage platform and repository hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. Account needs to be requested via the VU Service Portal. @@ -58,7 +58,7 @@ There are several tools available to support researchers in archiving their data Data Management Plan Tools -- [DMPonline](/tools/dmponline/index.qmd) is an online platform that enables researchers to create, manage, and share Data Management Plans. The platform provides structured templates to help researchers address key aspects of the research lifecycle, including legal and ethical requirements, storage, preservation, documentation, and responsibilities. +- [DMPonline](/tools/dmponline/index.qmd) is an online platform that enables researchers to create, manage, and share Data Management Plans. The platform provides structured templates to help researchers address key aspects of the research lifecycle, including legal and ethical requirements, storage, preservation, documentation, and responsibilities. Log in using VU credentials with Single Sign-on (SSO). @@ -74,7 +74,7 @@ There are several tools available to support researchers in publishing data: - [OSF](/tools/osf/index.qmd) is a cloud-based, open-source tool that supports researchers throughout the **active research stage**. It facilitates collaboration and connects services, materials, and other research objects for private use or public sharing. -- [Yoda](/tools/yoda/index.qmd) is a data storage platform and repository hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. +- [Yoda](/tools/yoda/index.qmd) is a data storage platform and repository hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. Account needs to be requested via the VU Service Portal. @@ -85,11 +85,11 @@ There are several tools available to support researchers in publishing data: There are several tools available to support researchers in storing data efficiently. The [Data Storage Finder](https://vu.nl/en/research/storagefinder) can help you decide which tools fit your situation best. -- [Research Drive](/tools/researchdrive/index.qmd) is a SURF-hosted online storage and collaboration platform for research data. It allows researchers to easily store and share files with others, both within and outside VU Amsterdam. Research Drive is a cloud storage platform that requires downloading data using Nextcloud to a local device for analysis. +- [Research Drive](/tools/researchdrive/index.qmd) is a SURF-hosted online storage and collaboration platform for research data. It allows researchers to easily store and share files with others, both within and outside VU Amsterdam. Research Drive is a cloud storage platform that requires downloading data using Nextcloud to a local device for analysis. Fine-grained distribution of folder access rights is possible. Account needs to be requested via the VU Service Portal. -- [SciStor](/tools/scistor/index.qmd) is an IT-hosted data storage service designed for storing large volumes of research data on campus. It provides high-speed connections to lab equipment, laptops, and workstations. +- [SciStor](/tools/scistor/index.qmd) is an IT-hosted data storage service designed for storing large volumes of research data on campus. It provides high-speed connections to lab equipment, laptops, and workstations. Connecting to high-performance computers is possible. Storage space needs to be requested via the VU Service Portal. -- [Yoda](/tools/yoda/index.qmd) is a data storage platform and repository hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. +- [Yoda](/tools/yoda/index.qmd) is a data storage platform and repository hosted by SURF. It supports researchers throughout the entire research lifecycle, from the safe and easy storage and sharing of data during the research process, to the sharing of data within research collaborations and ultimately to research data archiving and publication. Account needs to be requested via the VU Service Portal. @@ -99,9 +99,9 @@ There are several tools available to support researchers in storing data efficie A storage platform that allows (external) sharing is the easiest way to share data with others working on your project. This is possible with [Yoda](/tools/yoda/index.qmd) and [Research Drive](/tools/researchdrive/index.qmd) (with VU-internal and external colleagues) and with [SciStor](/tools/scistor/index.qmd) (only with VU colleagues). However, sometimes you might need to send data to a third party as a one-off. Regular email is not suitable for sending sensitive data, but there are alternatives: -- [SURFfilesender](https://filesender.surf.nl/?s=home) is a web-based application that allows authenticated users to securely and easily send arbitrarily large files to other users. Users without an account can be sent a guest upload voucher by an authenticated user. SURFfilesender is developed to the requirements of the higher education and research community. +- [SURFfilesender](https://filesender.surf.nl/?s=home) is a web-based application that allows authenticated users to securely and easily send arbitrarily large files to other users. Users without an account can be sent a guest upload voucher by an authenticated user. SURFfilesender is developed to the requirements of the higher education and research community. Log in using VU credentials with Single Sign-on (SSO). -- [Zivver](https://www.zivver.com/products/email-encryption-software) offers a secure way to send (large) files. With Zivver, you can encrypt your emails and attachments up to 5TB. This is available to all VU employees. You can find information on how to use Zivver in πŸ”’ [the VU service portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0012157). Encrypted email and file transfer with attachments up to 5TB. +- [Zivver](https://www.zivver.com/products/email-encryption-software) offers a secure way to send (large) files. With Zivver, you can encrypt your emails and attachments up to 5TB. This is available to all VU employees. You can find information on how to use Zivver in πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0012157). Encrypted email and file transfer with attachments up to 5TB. @@ -118,7 +118,7 @@ A storage platform that allows (external) sharing is the easiest way to share da Online Surveys Tools -- [Qualtrics](/tools/qualtrics/index.qmd) is a cloud-based survey platform that enables users to create and manage online surveys. It supports a variety of (complex) survey design requirements. VU’s Qualtrics licence is intended for scientific research purposes only, including data collection and management. +- [Qualtrics](/tools/qualtrics/index.qmd) is a cloud-based survey platform that enables users to create and manage online surveys. It supports a variety of (complex) survey design requirements. VU’s Qualtrics licence is intended for scientific research purposes only, including data collection and management. Log in using VU credentials with Single Sign-on (SSO). @@ -141,7 +141,7 @@ A storage platform that allows (external) sharing is the easiest way to share da Research Output Registration Tools -- [Pure](/tools/pure/index.qmd) is the Current Research Information System (CRIS) used at VU, serving as the central platform for registering and managing all research activities and outputs, including publications, datasets, and projects. +- [Pure](/tools/pure/index.qmd) is the Current Research Information System (CRIS) used at VU, serving as the central platform for registering and managing all research activities and outputs, including publications, datasets, research software/code, and projects. All researchers at VU Amsterdam have access to the back end and a public profile page. @@ -173,7 +173,7 @@ There are several tools available to support researchers in building and using v Data Analysis Toosl -VU Amsterdam provides licences for several data analysis tools. The different software options provided by IT are described in the πŸ”’ [the VU service portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0012864&table=kb_knowledge&searchTerm=spss). +VU Amsterdam provides licences for several data analysis tools. The different software options provided by IT are described in the πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0012864&table=kb_knowledge&searchTerm=spss). You can find more information on working with data in [the VU Libguide 'Working with data'](https://libguides.vu.nl/working-with-data/introduction). @@ -181,9 +181,9 @@ If you have any questions about the tools listed below, you can contact the [IT - [ATLAS.ti](https://atlasti.com/) is a qualitative data analysis software that supports coding, text interpretation and multimedia analysis. ATLAS.ti provides [video tutorials](https://atlasti.com/video-tutorials) to help users get started. -- [SPSS](https://www.surfspot.nl/vu) is a quantitative statistical analysis software package used for data management, statistical analysis, and data visualisation. You can find instructions for using the SPSS licence on the πŸ”’ [the VU service portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0022399&table=kb_knowledge&searchTerm=spss). There are [free tutroials](https://resultnetsearch.com/?dn=how2stats.net&sksubid=44786252&_slsen=0) availible to help users get started. You can find more in-depth, paid tutorials [here](https://statistics.laerd.com/). +- [SPSS](https://www.surfspot.nl/vu) is a quantitative statistical analysis software package used for data management, statistical analysis, and data visualisation. You can find instructions for using the SPSS licence on the πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0022399&table=kb_knowledge&searchTerm=spss). There are [free tutroials](https://resultnetsearch.com/?dn=how2stats.net&sksubid=44786252&_slsen=0) availible to help users get started. You can find more in-depth, paid tutorials [here](https://statistics.laerd.com/). -- [MATLAB](https://www.mathworks.com/academia/tah-portal/vrije-universiteit-amsterdam-30688271.html) is a programming language for numerical analysis, data visualisation, and algorithm development. You can find instructions for using the MATLAB licence on the πŸ”’ [the VU service portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0011916&table=kb_knowledge&searchTerm=matlab). +- [MATLAB](https://www.mathworks.com/academia/tah-portal/vrije-universiteit-amsterdam-30688271.html) is a programming language for numerical analysis, data visualisation, and algorithm development. You can find instructions for using the MATLAB licence on the πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0011916&table=kb_knowledge&searchTerm=matlab). - [Stata](https://www.scienceplus.com/nl/statistiek/stata/?gad_source=1&gad_campaignid=251688141&gbraid=0AAAAAD_cwtmYS8azW8JFKlpADJ1WIR2yy&gclid=CjwKCAjwhqfPBhBWEiwAZo196pDjD5tymxrHz163VRmksMh8P6zM_YzEYpkzFDHlnssDHcKBoeMKEBoCRh4QAvD_BwE) is a statistical package used for quantitative data analysis. Stata is what IT calls 'a specific software package', meaning that it's only available for specific user groups. If you're unsure whether Stata is available for you, we recommend asking someone in your department (e.g. supervisor or head of research group). More information and tutorials can be found in [the VU LibGuide 'Working with data'](https://libguides.vu.nl/working-with-data/software/stata-sources). From 0f159f368380c35a1de14d4532b782591eb8cfa9 Mon Sep 17 00:00:00 2001 From: Jolien-S <142608800+Jolien-S@users.noreply.github.com> Date: Thu, 30 Apr 2026 12:15:42 +0200 Subject: [PATCH 36/38] Informative URL description instead of 'here' --- topics/rdm_tools.qmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index f646b239e..b09c11d36 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -181,7 +181,7 @@ If you have any questions about the tools listed below, you can contact the [IT - [ATLAS.ti](https://atlasti.com/) is a qualitative data analysis software that supports coding, text interpretation and multimedia analysis. ATLAS.ti provides [video tutorials](https://atlasti.com/video-tutorials) to help users get started. -- [SPSS](https://www.surfspot.nl/vu) is a quantitative statistical analysis software package used for data management, statistical analysis, and data visualisation. You can find instructions for using the SPSS licence on the πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0022399&table=kb_knowledge&searchTerm=spss). There are [free tutroials](https://resultnetsearch.com/?dn=how2stats.net&sksubid=44786252&_slsen=0) availible to help users get started. You can find more in-depth, paid tutorials [here](https://statistics.laerd.com/). +- [SPSS](https://www.surfspot.nl/vu) is a quantitative statistical analysis software package used for data management, statistical analysis, and data visualisation. You can find instructions for using the SPSS licence on the πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0022399&table=kb_knowledge&searchTerm=spss). There are [free tutroials](https://resultnetsearch.com/?dn=how2stats.net&sksubid=44786252&_slsen=0) availible to help users get started. You can find more in-depth, paid tutorials by [Laerd Statistics](https://statistics.laerd.com/). - [MATLAB](https://www.mathworks.com/academia/tah-portal/vrije-universiteit-amsterdam-30688271.html) is a programming language for numerical analysis, data visualisation, and algorithm development. You can find instructions for using the MATLAB licence on the πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0011916&table=kb_knowledge&searchTerm=matlab). From 79d7f7acbc9183a49d62679641a4c1472bbb5695 Mon Sep 17 00:00:00 2001 From: Jolien-S <142608800+Jolien-S@users.noreply.github.com> Date: Thu, 30 Apr 2026 13:45:58 +0200 Subject: [PATCH 37/38] Final formatting --- topics/rdm_tools.qmd | 14 ++++++++------ 1 file changed, 8 insertions(+), 6 deletions(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index b09c11d36..9a4059357 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -83,7 +83,7 @@ There are several tools available to support researchers in publishing data: Data Storage Tools -There are several tools available to support researchers in storing data efficiently. The [Data Storage Finder](https://vu.nl/en/research/storagefinder) can help you decide which tools fit your situation best. +There are several tools available to support researchers in storing data in a way that suits their research project. The [Data Storage Finder](https://vu.nl/en/research/storagefinder) can help you decide which storage platforms fit your situation best. - [Research Drive](/tools/researchdrive/index.qmd) is a SURF-hosted online storage and collaboration platform for research data. It allows researchers to easily store and share files with others, both within and outside VU Amsterdam. Research Drive is a cloud storage platform that requires downloading data using Nextcloud to a local device for analysis. Fine-grained distribution of folder access rights is possible. Account needs to be requested via the VU Service Portal. @@ -116,7 +116,7 @@ A storage platform that allows (external) sharing is the easiest way to share da
-Online Surveys Tools +Online Survey Tools - [Qualtrics](/tools/qualtrics/index.qmd) is a cloud-based survey platform that enables users to create and manage online surveys. It supports a variety of (complex) survey design requirements. VU’s Qualtrics licence is intended for scientific research purposes only, including data collection and management. Log in using VU credentials with Single Sign-on (SSO). @@ -171,7 +171,7 @@ There are several tools available to support researchers in building and using v
-Data Analysis Toosl +Data Analysis Tools VU Amsterdam provides licences for several data analysis tools. The different software options provided by IT are described in the πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0012864&table=kb_knowledge&searchTerm=spss). @@ -192,7 +192,11 @@ If you have any questions about the tools listed below, you can contact the [IT Which tool is most suitable for your research can vary, depending on what kind of functionality you're looking for, what sort of data you're dealing with, or whether you need to share data with external partners. Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) is available to provide you with the guidance throughout your entire project lifecycle. -### Video +### Data Storage Finder + +Specifically for data storage tools, the [Data Storage Finder](https://vu.nl/en/research/storagefinder) can help you decide which storage platforms fit your situation best. + +### Overviews A subset of the tools listed above is highlighted in the video below ([DMPonline](/tools/dmponline/index.qmd), [DataverserNL](/tools/dataversenl/index.qmd), [Yoda](/tools/yoda/index.qmd), [OSF](/tools/osf/index.qmd), [Research Drive](/tools/researchdrive/index.qmd), [SciStor](/tools/scistor/index.qmd)). This is a nice resource if you'd like a quick, visual overview of these tools. @@ -202,8 +206,6 @@ A subset of the tools listed above is highlighted in the video below ([DMPonline -### Visual overview - The image below lists all services and tools provided by the Network Research Data Support (NeRDS). ![Overview of services and tools provided by the Network Research Data Support to researchers](../public/nerds-overview-services-tools.jpg) From bb0dc5fd5ac8d5e389a4685b604c2a9e8d671ceb Mon Sep 17 00:00:00 2001 From: Jolien-S <142608800+Jolien-S@users.noreply.github.com> Date: Thu, 30 Apr 2026 13:51:20 +0200 Subject: [PATCH 38/38] Place data analysis tools in correct alphabetical order --- topics/rdm_tools.qmd | 38 +++++++++++++++++++------------------- 1 file changed, 19 insertions(+), 19 deletions(-) diff --git a/topics/rdm_tools.qmd b/topics/rdm_tools.qmd index 9a4059357..1269463f0 100644 --- a/topics/rdm_tools.qmd +++ b/topics/rdm_tools.qmd @@ -39,6 +39,25 @@ There are several tools available to support researchers in performing computati
+
+ +Data Analysis Tools + +VU Amsterdam provides licences for several data analysis tools. The different software options provided by IT are described in the πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0012864&table=kb_knowledge&searchTerm=spss). + +You can find more information on working with data in [the VU Libguide 'Working with data'](https://libguides.vu.nl/working-with-data/introduction). + +If you have any questions about the tools listed below, you can contact the [IT Servicedesk](mailto:servicedesk.it@vu.nl). + +- [ATLAS.ti](https://atlasti.com/) is a qualitative data analysis software that supports coding, text interpretation and multimedia analysis. ATLAS.ti provides [video tutorials](https://atlasti.com/video-tutorials) to help users get started. + +- [SPSS](https://www.surfspot.nl/vu) is a quantitative statistical analysis software package used for data management, statistical analysis, and data visualisation. You can find instructions for using the SPSS licence on the πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0022399&table=kb_knowledge&searchTerm=spss). There are [free tutroials](https://resultnetsearch.com/?dn=how2stats.net&sksubid=44786252&_slsen=0) availible to help users get started. You can find more in-depth, paid tutorials by [Laerd Statistics](https://statistics.laerd.com/). + +- [MATLAB](https://www.mathworks.com/academia/tah-portal/vrije-universiteit-amsterdam-30688271.html) is a programming language for numerical analysis, data visualisation, and algorithm development. You can find instructions for using the MATLAB licence on the πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0011916&table=kb_knowledge&searchTerm=matlab). + +- [Stata](https://www.scienceplus.com/nl/statistiek/stata/?gad_source=1&gad_campaignid=251688141&gbraid=0AAAAAD_cwtmYS8azW8JFKlpADJ1WIR2yy&gclid=CjwKCAjwhqfPBhBWEiwAZo196pDjD5tymxrHz163VRmksMh8P6zM_YzEYpkzFDHlnssDHcKBoeMKEBoCRh4QAvD_BwE) is a statistical package used for quantitative data analysis. Stata is what IT calls 'a specific software package', meaning that it's only available for specific user groups. If you're unsure whether Stata is available for you, we recommend asking someone in your department (e.g. supervisor or head of research group). More information and tutorials can be found in [the VU LibGuide 'Working with data'](https://libguides.vu.nl/working-with-data/software/stata-sources). + +
@@ -169,25 +188,6 @@ There are several tools available to support researchers in building and using v
-
- -Data Analysis Tools - -VU Amsterdam provides licences for several data analysis tools. The different software options provided by IT are described in the πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0012864&table=kb_knowledge&searchTerm=spss). - -You can find more information on working with data in [the VU Libguide 'Working with data'](https://libguides.vu.nl/working-with-data/introduction). - -If you have any questions about the tools listed below, you can contact the [IT Servicedesk](mailto:servicedesk.it@vu.nl). - -- [ATLAS.ti](https://atlasti.com/) is a qualitative data analysis software that supports coding, text interpretation and multimedia analysis. ATLAS.ti provides [video tutorials](https://atlasti.com/video-tutorials) to help users get started. - -- [SPSS](https://www.surfspot.nl/vu) is a quantitative statistical analysis software package used for data management, statistical analysis, and data visualisation. You can find instructions for using the SPSS licence on the πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0022399&table=kb_knowledge&searchTerm=spss). There are [free tutroials](https://resultnetsearch.com/?dn=how2stats.net&sksubid=44786252&_slsen=0) availible to help users get started. You can find more in-depth, paid tutorials by [Laerd Statistics](https://statistics.laerd.com/). - -- [MATLAB](https://www.mathworks.com/academia/tah-portal/vrije-universiteit-amsterdam-30688271.html) is a programming language for numerical analysis, data visualisation, and algorithm development. You can find instructions for using the MATLAB licence on the πŸ”’ [the VU Service Portal](https://services.vu.nl/esc?id=kb_article&sysparm_article=KB0011916&table=kb_knowledge&searchTerm=matlab). - -- [Stata](https://www.scienceplus.com/nl/statistiek/stata/?gad_source=1&gad_campaignid=251688141&gbraid=0AAAAAD_cwtmYS8azW8JFKlpADJ1WIR2yy&gclid=CjwKCAjwhqfPBhBWEiwAZo196pDjD5tymxrHz163VRmksMh8P6zM_YzEYpkzFDHlnssDHcKBoeMKEBoCRh4QAvD_BwE) is a statistical package used for quantitative data analysis. Stata is what IT calls 'a specific software package', meaning that it's only available for specific user groups. If you're unsure whether Stata is available for you, we recommend asking someone in your department (e.g. supervisor or head of research group). More information and tutorials can be found in [the VU LibGuide 'Working with data'](https://libguides.vu.nl/working-with-data/software/stata-sources). - -
## Choosing a Tool Which tool is most suitable for your research can vary, depending on what kind of functionality you're looking for, what sort of data you're dealing with, or whether you need to share data with external partners. Not sure which tools fits your project? The [RDM Support Desk](mailto:rdm.vu.nl) is available to provide you with the guidance throughout your entire project lifecycle.