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Description
On linux, I installed wLogDate using a conda environment yaml as follows:
name: wlogdate
channels:
- defaults
- bioconda
- conda-forge
dependencies:
- wlogdate=1.0.3
After entering the environment with conda activate wlogdate and trying to run wLogDate with launch_wLogDate.py -h,
I got this error:
File "/home/joelnitta/miniconda3/envs/wlogdate/bin/launch_wLogDate.py", line 4, in <module>
from logdate.logD_lib import logDate_with_random_init,f_wLogDate,f_wLogDate_changeVar
File "/home/joelnitta/miniconda3/envs/wlogdate/lib/python3.9/site-packages/logdate/logD_lib.py", line 1, in <module>
from dendropy import Tree,TaxonNamespace
ModuleNotFoundError: No module named 'dendropy'
Changing the environment yaml to:
name: wlogdate
channels:
- defaults
- bioconda
- conda-forge
dependencies:
- dendropy
- wlogdate=1.0.3
fixes the problem.
So I wonder if there is a missing dependency somewhere in the conda package.
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