report errors：the flag --small_molecules

[ihuskyyyy]

husky@ubuntu:~/DockQ-2.1.3$ DockQ examples/1HHO_hem.cif examples/2HHB_hem.cif --small_molecule --mapping :ABEFG --short
usage: DockQ [-h] [--capri_peptide] [--short] [--verbose] [--no_align]
[--n_cpu CPU] [--max_chunk CHUNK] [--optDockQF1]
[--allowed_mismatches ALLOWED_MISMATCHES]
[--mapping MODELCHAINS:NATIVECHAINS]

DockQ: error: unrecognized arguments: --small_molecule

[clami66]

I am guessing you have a previous version of DockQ installed. What do you get when running:

pip list | grep DockQ
?