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Copying over comments from @giovp in issue willtownes/nsf-paper#2
- make it pip installable
pip install -e . - minimal pre-commit checks (black, flake8) for code quality
- maybe tox for tests? although I guess pytest already solution.
Then pypi publishing and docs (if planned) could be done later on.
I guess what I think would be cool to have eventually is something like this
import nsf
import scanpy as sc
# maybe some preprocessing e.g. data splitting etc.
nsf.model(adata, n_factors=..., kernel_type=..., idx_points=..., ...)
sc.pl.spatial(adata, color="factor1", ...)giovp, julianalbers and pedrofale
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