CITEseq / protein applications

[fisherj-2212]

Hi,

I am interested in the application of BABEL to multimodal RNA / protein data. You mention you have a proof of concept for this. Would you please be able to point me to the relevant file, and give some guidance on how to apply BABEL to CITEseq ?

[fisherj-2212]

Updating to add that I've noticed separate functions for protein data called 'train_protein_predictor.py' and 'predict_protein.py'. Could you provide some guidance on what format the required arguments should take? What a typical function call might look like?

[zhangxueting233]

I am also very interested,do you solve this problem？

[fisherj2]

I ended up adapting the python functions provided in the scLinear repo , where the authors present a comparison of scLinear to BABEL. In particular, the method ADTPredictorBabel(), which is defined in a commented out section of prediction.py

[zhangxueting233]

Thanks for your reply