starting from h5ad data with both ATAC and RNA.

[Xparx]

Hi,

I'm trying to run the training pipeline python ~/projects/lib/babel/bin/train_model.py --data $DATA --outdir $MODELDIR.

However I get the error:

File "~/projects/lib/babel/babel/utils.py", line 163, in sc_read_10x$
                                                                                              |    assert fname.endswith(".h5")
                                                                                              |AssertionError

Looks like the file never gets processed by the sc.read_h5ad function but default sto the h5.

Also. My training dat acontains both peaks and genes. How do I make sure the model understands what it has?