Hi Kevin,
I find this project really interesting and would like to try it out on one of our internal datasets. So, as a first step, I was trying to reproduce some of your results from the jupyter notebook jupyter/multi_localization/multi_localization_kmer.ipynb, and right now I'm having a really tough time due to some issues. Some of the dependencies like biopython, pyfaidx, pytorch, tqdm are missing from the environment.yaml file and I've also noticed that there are a couple of files hard coded in data_loader module that are missing, for example, the files in line 72, 81 and line 159.
It would be great if you can upload the missing files somewhere or update the README.md with some additional information on how to reproduce these missing files.
Thank you for your help.
Hi Kevin,
I find this project really interesting and would like to try it out on one of our internal datasets. So, as a first step, I was trying to reproduce some of your results from the jupyter notebook
jupyter/multi_localization/multi_localization_kmer.ipynb, and right now I'm having a really tough time due to some issues. Some of the dependencies likebiopython,pyfaidx,pytorch,tqdmare missing from the environment.yaml file and I've also noticed that there are a couple of files hard coded in data_loader module that are missing, for example, the files in line 72, 81 and line 159.It would be great if you can upload the missing files somewhere or update the README.md with some additional information on how to reproduce these missing files.
Thank you for your help.