From 51048bf488e6cf9f7a54f6194fb52e41fdd400f0 Mon Sep 17 00:00:00 2001 From: Livisu Pajares Date: Tue, 15 Jul 2025 09:53:19 -0500 Subject: [PATCH 1/5] Update .gitignore Add .DS_Store files --- .gitignore | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index 6d188b07..8a68feb7 100644 --- a/.gitignore +++ b/.gitignore @@ -7,4 +7,6 @@ src/*.so src/*.dll vignettes/*.png vignettes/*.Rmd -*.o \ No newline at end of file +*.o +*/.DS_Store +.DS_Store From 36f0821bd94d9b736303ff243c7b16364bf8453a Mon Sep 17 00:00:00 2001 From: Livisu Pajares Date: Tue, 15 Jul 2025 09:54:00 -0500 Subject: [PATCH 2/5] Fix exported function names in NAMESPACE Renamed several exported functions in the NAMESPACE file for consistency: 'Plot.sampletrend' to 'plot.sample.trend', 'RemoveMissingPercent' to 'RemoveMissingByPercent', and 'plot_dist' to 'plot.sample.dist'. --- NAMESPACE | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/NAMESPACE b/NAMESPACE index e4ab4e46..43cd1778 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -245,7 +245,7 @@ export(PerformROIExtraction) export(PerformSignalDriftCorrection) export(PerformVoteCounting) export(Plot.Permutation) -export(Plot.sampletrend) +export(plot.sample.trend) export(PlotANOVA) export(PlotANOVA2) export(PlotASCA.Permutation) @@ -384,7 +384,7 @@ export(RemoveCmpd) export(RemoveData) export(RemoveDuplicates) export(RemoveGene) -export(RemoveMissingPercent) +export(RemoveMissingByPercent) export(ReplaceMin) export(RerenderMetPAGraph) export(SAM.Anal) @@ -458,7 +458,7 @@ export(plotMSfeature) export(plotMirror) export(plotProfile) export(plotSingleTIC) -export(plot_dist) +export(plot.sample.dist) export(processMSMSupload) export(savePeakListMetaData) export(setInclusionDataSets) From 5f661ae002744be329c7adb05f8ebbf8e0f95e9f Mon Sep 17 00:00:00 2001 From: Livisu Pajares Date: Tue, 22 Jul 2025 10:57:53 -0500 Subject: [PATCH 3/5] fix: Update exported function in NAMESPACE Replaced export of PlotImpVarMeta with PlotImpVarCont in the NAMESPACE file to reflect the correct function being made available for package users. --- NAMESPACE | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/NAMESPACE b/NAMESPACE index 43cd1778..73a5f277 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -268,7 +268,7 @@ export(PlotHeatMap) export(PlotHeatMap2) export(PlotImpBiomarkers) export(PlotImpVar) -export(PlotImpVarMeta) +export(PlotImpVarCont) export(PlotInmexGraph) export(PlotInmexPath) export(PlotASCAInteraction) From db8fefb28033ca097a9ac88c7c3e4ce33ee8e200 Mon Sep 17 00:00:00 2001 From: Livisu Pajares Date: Thu, 24 Jul 2025 09:34:59 -0500 Subject: [PATCH 4/5] Update .gitignore --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index 8a68feb7..00b6a83b 100644 --- a/.gitignore +++ b/.gitignore @@ -10,3 +10,4 @@ vignettes/*.Rmd *.o */.DS_Store .DS_Store +MetaboAnalystR_4.0.0.tar.gz From f984dfdc7cd927c97b5014e1af47ab309d8c9ad8 Mon Sep 17 00:00:00 2001 From: Livisu Pajares Date: Thu, 24 Jul 2025 09:38:07 -0500 Subject: [PATCH 5/5] Revert "fix: Update exported function in NAMESPACE" This reverts commit 5f661ae002744be329c7adb05f8ebbf8e0f95e9f. --- NAMESPACE | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/NAMESPACE b/NAMESPACE index 73a5f277..43cd1778 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -268,7 +268,7 @@ export(PlotHeatMap) export(PlotHeatMap2) export(PlotImpBiomarkers) export(PlotImpVar) -export(PlotImpVarCont) +export(PlotImpVarMeta) export(PlotInmexGraph) export(PlotInmexPath) export(PlotASCAInteraction)