From 0d8f7834ed5f93fd5a753aec6bb06b76e5153f38 Mon Sep 17 00:00:00 2001
From: StarSkyZheng <q623928815@users.noreply.github.com>
Date: Thu, 10 Dec 2020 17:10:38 +0800
Subject: [PATCH] Update read_store.cpp

---
 src/fsa/read_store.cpp | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/fsa/read_store.cpp b/src/fsa/read_store.cpp
index 9bb95f3..546e68d 100644
--- a/src/fsa/read_store.cpp
+++ b/src/fsa/read_store.cpp
@@ -46,9 +46,9 @@ void ReadStore::SetNameToId(const std::string &name, int id) {
 
 void ReadStore::Load(const std::string &fname, const std::string &type, bool all, const std::unordered_set<Seq::Id>& seqids) {
     std::string t = type != "" ? type : DetectFileType(fname);
-    if (t == "fasta" || t == "fasta.gz") {
+    if (t == "fasta" || t == "fasta.gz" || t == "fa" || t == "fa.gz" ) {
         LoadFasta(fname, all, seqids);
-    } else if (t == "fastq" || t == "fastq.gz") {
+    } else if (t == "fastq" || t == "fastq.gz" || t == "fq" || t == "fq.gz" ) {
         LoadFastq(fname, all, seqids);
     } else if (t == "fofn") {
         LoadFofn(fname, all, seqids);