test failures #22
Description
Newly cloned, and running pytest results in
16 failed, 979 passed, 496 skipped, 23 xfailed, 112 xpassed, 115 warnings, 102 error
This is with pytest 3.10 and pytest-tornado installed. Full versions below. First, a sample failure:
_______________________________________________________________________ test_filter_zip _______________________________________________________________________
def test_func():
del _global_workers[:]
_global_clients.clear()
active_threads_start = set(threading._active)
reset_config()
dask.config.set({'distributed.comm.timeouts.connect': '5s'})
# Restore default logging levels
# XXX use pytest hooks/fixtures instead?
for name, level in logging_levels.items():
logging.getLogger(name).setLevel(level)
result = None
workers = []
with pristine_loop() as loop:
with check_active_rpc(loop, active_rpc_timeout):
@gen.coroutine
def coro():
with dask.config.set(config):
s = False
for i in range(5):
try:
s, ws = yield start_cluster(
ncores, scheduler, loop, security=security,
Worker=Worker, scheduler_kwargs=scheduler_kwargs,
worker_kwargs=worker_kwargs)
except Exception as e:
logger.error("Failed to start gen_cluster, retryng", exc_info=True)
else:
workers[:] = ws
args = [s] + workers
break
if s is False:
raise Exception("Could not start cluster")
if client:
c = yield Client(s.address, loop=loop, security=security,
asynchronous=True, **client_kwargs)
args = [c] + args
try:
future = func(*args)
if timeout:
future = gen.with_timeout(timedelta(seconds=timeout),
future)
result = yield future
if s.validate:
s.validate_state()
finally:
if client:
yield c._close(fast=s.status == 'closed')
yield end_cluster(s, workers)
yield gen.with_timeout(timedelta(seconds=1),
cleanup_global_workers())
try:
c = yield default_client()
except ValueError:
pass
else:
yield c._close(fast=True)
raise gen.Return(result)
result = loop.run_sync(coro, timeout=timeout * 2 if timeout else timeout)
for w in workers:
if getattr(w, 'data', None):
try:
w.data.clear()
except EnvironmentError:
# zict backends can fail if their storage directory
# was already removed
pass
del w.data
DequeHandler.clear_all_instances()
for w in _global_workers:
w = w()
w._close(report=False, executor_wait=False)
if w.status == 'running':
w.close()
del _global_workers[:]
if PY3 and not WINDOWS and check_new_threads:
start = time()
while True:
bad = [t for t, v in threading._active.items()
if t not in active_threads_start and
"Threaded" not in v.name and
"watch message" not in v.name]
if not bad:
break
else:
sleep(0.01)
if time() > start + 5:
from distributed import profile
tid = bad[0]
thread = threading._active[tid]
call_stacks = profile.call_stack(sys._current_frames()[tid])
> assert False, (thread, call_stacks)
E AssertionError: (<Thread(Profile, started daemon 123145584852992)>, [' File "/Users/mdurant/anaconda/envs/py36/lib/python3.6/threadin...ant/anaconda/envs/py36/lib/python3.6/site-packages/distributed/profile.py", line 249, in _watch
E \tsleep(interval)
E '])
E assert False
../../anaconda/envs/py36/lib/python3.6/site-packages/distributed/utils_test.py:865: AssertionError
-------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------
distributed.scheduler - INFO - Clear task state
distributed.scheduler - INFO - Scheduler at: tcp://127.0.0.1:62582
distributed.worker - INFO - Start worker at: tcp://127.0.0.1:62583
distributed.worker - INFO - Listening to: tcp://127.0.0.1:62583
distributed.worker - INFO - Waiting to connect to: tcp://127.0.0.1:62582
distributed.worker - INFO - -------------------------------------------------
distributed.worker - INFO - Threads: 1
distributed.worker - INFO - Memory: 17.18 GB
distributed.worker - INFO - Local Directory: /Users/mdurant/code/rapidz/dask-worker-space/worker-te39lu4r
distributed.worker - INFO - -------------------------------------------------
distributed.worker - INFO - Start worker at: tcp://127.0.0.1:62584
distributed.worker - INFO - Listening to: tcp://127.0.0.1:62584
distributed.worker - INFO - Waiting to connect to: tcp://127.0.0.1:62582
distributed.worker - INFO - -------------------------------------------------
distributed.worker - INFO - Threads: 2
distributed.worker - INFO - Memory: 17.18 GB
distributed.worker - INFO - Local Directory: /Users/mdurant/code/rapidz/dask-worker-space/worker-suzejl65
distributed.worker - INFO - -------------------------------------------------
distributed.scheduler - INFO - Register tcp://127.0.0.1:62583
distributed.scheduler - INFO - Register tcp://127.0.0.1:62584
distributed.scheduler - INFO - Starting worker compute stream, tcp://127.0.0.1:62583
distributed.core - INFO - Starting established connection
distributed.scheduler - INFO - Starting worker compute stream, tcp://127.0.0.1:62584
distributed.core - INFO - Starting established connection
distributed.worker - INFO - Registered to: tcp://127.0.0.1:62582
distributed.worker - INFO - -------------------------------------------------
distributed.core - INFO - Starting established connection
distributed.worker - INFO - Registered to: tcp://127.0.0.1:62582
distributed.worker - INFO - -------------------------------------------------
distributed.core - INFO - Starting established connection
distributed.scheduler - INFO - Receive client connection: Client-fbdd58e6-1424-11e9-be60-acbc32a9ff1d
distributed.core - INFO - Starting established connection
distributed.scheduler - INFO - Remove client Client-fbdd58e6-1424-11e9-be60-acbc32a9ff1d
distributed.worker - INFO - Stopping worker at tcp://127.0.0.1:62583
distributed.worker - INFO - Stopping worker at tcp://127.0.0.1:62584
distributed.scheduler - INFO - Scheduler closing...
distributed.scheduler - INFO - Scheduler closing all comms
distributed.worker - INFO - Connection to scheduler broken. Reconnecting...
distributed.worker - INFO - Connection to scheduler broken. Reconnecting...
distributed.worker - INFO - -------------------------------------------------
distributed.worker - INFO - -------------------------------------------------
Versions:
# packages in environment at /Users/mdurant/anaconda/envs/py36:
#
# Name Version Build Channel
_nb_ext_conf 0.4.0 py36_1
affine 2.2.0 py36_0
alabaster 0.7.10 py36h174008c_0
anaconda-client 1.6.14 py36_0
aplus 0.11.0 py_1 conda-forge
appdirs 1.4.3 <pip>
appdirs 1.4.3 py36_0
appnope 0.1.0 py36hf537a9a_0
arrow-cpp 0.10.0 py36h70250a7_0 conda-forge
asciitree 0.3.3 py36_1 conda-forge
asn1crypto 0.24.0 py36_0
astroid 1.6.2 py36_0
astropy 3.0.1 py36h1de35cc_1
atomicwrites 1.2.1 py36_0
attrs 17.4.0 py36_0
autopep8 1.3.4 py_0 conda-forge
awkward 0.0.3 <pip>
aws-xray-sdk 0.95 <pip>
aws-xray-sdk 0.95 py_0 conda-forge
babel 2.5.3 py36_0
backcall 0.1.0 py36_0
backports 1.0 py_2 conda-forge
backports.tempfile 1.0 py_0 conda-forge
backports.weakref 1.0.post1 py36_1000 conda-forge
bcolz 1.2.1 py36h1702cab_0
bcrypt 3.1.4 py36h1de35cc_0
beautifulsoup4 4.6.0 py36h72d3c9f_1
blas 1.0 mkl
bleach 2.1.3 py36_0
blinker 1.4 py36_0
blosc 1.14.3 hd9629dc_0
bokeh 1.0.1 py36_0
boost-cpp 1.67.0 h3a22d5f_0 conda-forge
boto 2.48.0 py36hdbc59ac_1
boto3 1.7.84 py_0 conda-forge
botocore 1.10.84 py_0 conda-forge
bottleneck 1.2.1 py36hbd380ad_0
bqplot 0.11.0 py36_0 conda-forge
brotli 0.6.0 1 conda-forge
bzip2 1.0.6 hd86a083_4
ca-certificates 2018.03.07 0
cachetools 2.0.1 py_0 conda-forge
cachetools 2.0.1 <pip>
cairo 1.14.12 he6fea26_5 conda-forge
certifi 2018.11.29 py36_0
cffi 1.11.5 py36h342bebf_0
cftime 1.0.0b1 py36h1d22016_0
chardet 3.0.4 <pip>
chardet 3.0.4 py36h96c241c_1
cityhash 0.2.3.post9 <pip>
click 6.7 py36hec950be_0
click-plugins 1.0.3 py36hb58b8ed_0
cligj 0.4.0 py36h479156e_0
cloudpickle 0.5.3 py36_0
clyent 1.2.2 py36hae3ad88_0
colorcet 1.0.0 py36_0
coloredlogs 9.0 py36_0
conda 4.5.12 py36_0
conda-build 3.8.0 py36_0
conda-env 2.6.0 h36134e3_0
conda-verify 2.0.0 py36he837df3_0
cookies 2.2.1 py36_0
coverage 4.5.1 py36h1de35cc_0
cryptography 2.2.2 py36h1de35cc_0
curl 7.61.0 ha441bb4_0
cyberpandas 1.1.1 py36_0 conda-forge
cycler 0.10.0 py36hfc81398_0
cython 0.29 py36h0a44026_0
cytoolz 0.9.0.1 py36h1de35cc_1
dask 0.18.2+45.gfe57472 <pip>
dask 0.19.0 py36_0
dask-core 0.19.0 py36_0
dask-glm 0.1.0 py36hd478735_0
dask-ml 0.4.1 py36h917ab60_0
dask-searchcv 0.2.0 py36hf54d424_0
data-us-states 1.0.0 1 local
datashader 0.6.5 py36_0
datashape 0.5.4 py36hfb22df8_0
dbus 1.13.0 h3a4f0e9_0 conda-forge
decorator 4.1.2 py36h69a1b52_0
deprecation 1.0.1 <pip>
dicttoxml 1.7.4 py36_0 conda-forge
distributed 1.21.6+8.g362c169.dirty <pip>
distributed 1.22.0+43.g55b933c <pip>
distributed 1.23.0 py36_0
docker 3.2.1 <pip>
docker-py 3.6.0 py36_1000 conda-forge
docker-pycreds 0.2.2 <pip>
docker-pycreds 0.3.0 py_1 conda-forge
docopt 0.6.2 py36_0
docutils 0.14 py36hbfde631_0
ecdsa 0.13 py_0 conda-forge
elasticsearch 6.2.0 py36_0
entrypoints 0.2.3 py36hd81d71f_2
expat 2.2.5 hb8e80ba_0
fastavro 0.21.4 py36h1de35cc_0
fastcache 1.0.2 py36h1de35cc_2
fasteners 0.14.1 py36_2 conda-forge
fastparquet 0.2.0 <pip>
fastparquet 0.1.3 py36hb84e16e_0
filelock 3.0.4 py36_0
flake8 2.5.5 <pip>
flask 0.12.2 py36h5658096_0
fletcher 0.1.2 py_0 conda-forge
fontconfig 2.13.1 hce039c3_0 conda-forge
freetype 2.9.1 h6debe1e_4 conda-forge
freexl 1.0.5 h1de35cc_0
fs 2.0.23 <pip>
fs 2.0.20 py36_0 conda-forge
fsspec 0.1.2 <pip>
funcsigs 1.0.2 py36_0
fusepy 2.0.4 py36_0 bioconda
future 0.16.0 py36_1
gcsfs 0.0.6 <pip>
gcsfs 0.2.0 <pip>
gdal 2.2.4 py36hb00a9d7_9 conda-forge
geos 3.6.2 h5470d99_2
geotiff 1.4.2 h700e5ad_4 conda-forge
gettext 0.19.8.1 h15daf44_3
giflib 5.1.4 h1035379_1
glib 2.55.0 h464dc38_2 conda-forge
glob2 0.6 py36h94c9186_0
gmp 6.1.2 hb37e062_1
gmpy2 2.0.8 py36h6ef4df4_2
google-auth 1.4.1 <pip>
google-auth 1.5.0 py_0 conda-forge
google-auth-oauthlib 0.1.0 py36_0 conda-forge
google-auth-oauthlib 0.2.0 <pip>
graphviz 2.38.0 hd4f1ed2_9 conda-forge
gsw 3.2.1 py36h470a237_2 conda-forge
gunicorn 19.9.0 py36_0
h5py 2.8.0 py36h3c9e6ae_0
hacking 1.0.0 <pip>
hadoop-test-cluster 0.0.4 <pip>
happybase 1.1.0 py36_2 conda-forge
hdf4 4.2.13 h39711bb_2
hdf5 1.10.2 hfa1e0ec_1
heapdict 1.0.0 py36h27a9ac6_0
holoviews 1.9.5 <pip>
holoviews 1.10.9 py_0 pyviz
html5lib 1.0.1 py36h2f9c1c0_0
httpretty 0.9.6 py36_0
humanfriendly 4.10 py36_0
hvplot 0.2.1 py_0 pyviz
hypothesis 3.38.5 py36hcba0581_0
icu 58.2 h4b95b61_1
idna 2.6 <pip>
idna 2.6 py36h8628d0a_1
imageio 2.3.0 py36_0
imagesize 1.0.0 py36_0
import-profiler 0.0.3 <pip>
intake 0.2.9 py_0 conda-forge
intake 0.3.0 <pip>
intake-accumulo 0.1.1 <pip>
intake-astro 0.1.1 <pip>
intake-avro 0.1.0 0 intake
intake-avro 0.2.0 <pip>
intake-github 0.0.1 <pip>
intake-mnist-data 0.0.1 py_0 local
intake-mongo 0.1.0 <pip>
intake-parquet 0.2.1 <pip>
intake-solr 0.0.4+2.g0f3030d <pip>
intake-spark 0.1.1 <pip>
intake-splunk 0.0.4 <pip>
intake-sql 0.2.0 <pip>
intake-xarray 0.0.1 <pip>
intel-openmp 2018.0.0 h8158457_8
ipykernel 4.8.2 py36_0
ipyleaflet 0.9.0 py36_0 conda-forge
ipympl 0.2.1 py36_0 conda-forge
ipython 6.3.1 py36_0
ipython_genutils 0.2.0 py36h241746c_0
ipyvolume 0.4.6 py_1 conda-forge
ipywebrtc 0.3.0 py_1 conda-forge
ipywidgets 7.2.1 py36_0
isodate 0.6.0 py36h339218c_0
isort 4.3.4 py36_0
itk 4.13.0 py36_0 conda-forge
itkwidgets 0.9.0 <pip>
itsdangerous 0.24 py36h49fbb8d_1
jedi 0.11.1 py36_0
jinja2 2.10 py36hd36f9c5_0
jmespath 0.9.3 py36h767a2d6_0
joblib 0.11 py36_0
jpeg 9c h470a237_1 conda-forge
json-c 0.12.1 h470a237_1 conda-forge
jsondiff 1.1.1 py_0 conda-forge
jsondiff 1.1.1 <pip>
jsonpickle 0.9.6 <pip>
jsonpickle 0.9.6 py_1 conda-forge
jsonschema 2.6.0 py36hb385e00_0
jupyter 1.0.0 py36_4
jupyter_client 5.2.3 py36_0
jupyter_console 5.2.0 py36hccf5b1c_1
jupyter_core 4.4.0 py36h79cf704_0
jupyterlab 0.34.3 py36_0
jupyterlab-thredds 0.1.0 <pip>
jupyterlab_launcher 0.13.1 py36_0
kapteyn 2.3 np111py36_1 conda-forge
kealib 1.4.9 h0bee7d0_2 conda-forge
keepalive 0.5 py36_0 conda-forge
keras 2.2.0 0
keras-applications 1.0.2 py36_0
keras-base 2.2.0 py36_0
keras-preprocessing 1.0.1 py36_0
keyring 15.1.0 py36_0
kiwisolver 1.0.1 py36h792292d_0
krb5 1.14.2 h9a779f2_6
lazy-object-proxy 1.3.1 py36h2fbbe47_0
libboost 1.65.1 hcc95346_4
libcurl 7.61.0 hf30b1f0_0
libcxx 4.0.1 h579ed51_0
libcxxabi 4.0.1 hebd6815_0
libdap4 3.19.1 h18059cb_1 conda-forge
libedit 3.1.20170329 hb402a30_2
libffi 3.2.1 h475c297_4
libgdal 2.2.4 hdb23ba1_9 conda-forge
libgfortran 3.0.1 h93005f0_2
libiconv 1.15 hdd342a3_7
libkml 1.3.0 hc0cae1e_3
libnetcdf 4.6.1 h148f0bd_0
libntlm 1.4 h1de35cc_2
libpcap 1.8.1 ha9f8877_0 intake
libpng 1.6.34 he12f830_0
libpq 10.3 hf30b1f0_0
libprotobuf 3.5.2 h2cd40f5_0
librdkafka 0.11.0 0 conda-forge
libsodium 1.0.16 h3efe00b_0
libspatialite 4.3.0a h3b29d86_23 conda-forge
libssh2 1.8.0 h322a93b_4
libtiff 4.0.9 h0dac147_0
libuuid 1.0.3 h6bb4b03_2
libxml2 2.9.8 h2866646_0
libxslt 1.1.32 hb819dd2_0
line_profiler 2.1.2 py36h1de35cc_0
llvmlite 0.26.0 py36_0 numba
locket 0.2.0 py36hca03003_1
lxml 4.2.4 py36hef8c89e_0
lz4 0.10.1 py36_0
lz4 0.19.1 <pip>
lz4-c 1.8.0 h8e33030_0
lzo 2.10 h362108e_2
mako 1.0.7 py36_0
markdown 3.0.1 py36_0
markupsafe 1.0 py36h3a1e703_1
marshmallow 3.0.0b6 <pip>
matplotlib 2.2.3 py36h0e0179f_0 conda-forge
mccabe 0.6.1 py36hdaeb55d_0
mccabe 0.2.1 <pip>
mechanicalsoup 0.11.0 py_0 conda-forge
memory_profiler 0.52.0 py36_0
mistune 0.8.3 py36_0
mkl 2018.0.3 1
mkl_fft 1.0.4 py36h5d10147_1
mkl_random 1.0.1 py36h5d10147_1
mmh3 2.5.1 <pip>
mock 2.0.0 py36hd48142b_0
mock 2.0.0 <pip>
mongo-driver 0.7.1 0
mongoadapter 2.0.0 py36_0 file:///Users/mdurant/anaconda/envs/py36/conda-bld
monotonic 1.4 py36_0 conda-forge
more-itertools 4.3.0 py36_0
moto 1.3.6 py_0 conda-forge
moto 1.3.3 <pip>
mpc 1.1.0 h6ef4df4_1
mpfr 4.0.1 h3018a27_3
mpmath 1.0.0 py36_2
msgpack 0.5.6 <pip>
msgpack-numpy 0.4.3 py36_0
msgpack-python 0.5.6 py36h04f5b5a_0
multipledispatch 0.5.0 py36_0
nb_anacondacloud 1.4.0 py36_0
nb_conda 2.2.1 py36h349edbb_0
nb_conda_kernels 2.1.0 py36_0
nbconvert 5.3.1 py36h810822e_0
nbformat 4.4.0 py36h827af21_0
nbpresent 3.0.2 py36hef4c988_1
nbsphinx 0.3.3 py_0 conda-forge
ncurses 6.1 hfc679d8_1 conda-forge
netcdf4 1.4.0 py36h08833f9_1
networkx 2.1 py36_0
ninja 1.8.2 py36h04f5b5a_1
notebook 5.4.1 py36_0
nufft 0.0.1.dev0 <pip>
numba 0.41.0 np115py36h0a44026_0 numba
numcodecs 0.5.5 py36_0 conda-forge
numexpr 2.6.5 py36h057f876_0
numpy 1.15.3 py36h6a91979_0
numpy-base 1.15.3 py36h8a80b8c_0
numpydoc 0.8.0 py36_0
oauthlib 2.1.0 py36_0
oauthlib 2.0.7 <pip>
olefile 0.45.1 py36_0
openjpeg 2.3.0 h9b27163_0
openssl 1.0.2p h1de35cc_0
owslib 0.16.0 py36_0
packaging 17.1 py36_0
pandas 0.23.4 py36h6440ff4_0
pandas-datareader 0.6.0 py36_0
pandoc 1.19.2.1 ha5e8f32_1
pandocfilters 1.4.2 py36h3b0b094_1
panel 0.1.2 py_0 pyviz
param 1.8.1 py_0 pyviz
paramiko 2.4.2 py36_0
paramnb 2.0.4 py_0 pyviz
parquet-cpp 1.5.0.pre h83d4a3d_0 conda-forge
parso 0.1.1 py36hc90e01c_0
partd 0.3.8 py36hf5c4cb8_0
patsy 0.5.0 py36_0
pbr 4.0.1 <pip>
pbr 4.0.2 py36_0
pbr 0.11.1 <pip>
pcapy 0.11.1 py36ha52361c_0 intake
pcre 8.42 h378b8a2_0
pep8 1.5.7 <pip>
pexpect 4.3.1 py36_0
pickle5 0.0.4 py36h470a237_0 conda-forge
pickleshare 0.7.4 py36hf512f8e_0
pillow 5.2.0 py36hb68e598_0
pims 0.4.1 py_1 conda-forge
pip 18.1 py36_0
pixman 0.34.0 hca0a616_3
pkginfo 1.4.2 py36_1
pluggy 0.8.0 py36_0
ply 3.11 py36_0
poppler 0.67.0 h4d7e492_3 conda-forge
poppler-data 0.4.8 hf2eda46_0
postgresadapter 2.0.1 py36_0 intake
postgresql 10.3 hf30b1f0_0
profimp 0.0.3 <pip>
progressbar2 3.37.1 py36_0
proj4 4.9.3 h470a237_8 conda-forge
prompt_toolkit 1.0.15 py36haeda067_0
protobuf 3.5.2 py36h0a44026_0
psutil 5.4.3 py36h1de35cc_0
psycopg2 2.7.4 py36hdbc3d79_0
ptyprocess 0.5.2 py36he6521c3_0
py 1.5.2 py36ha69170d_0
py4j 0.10.7 py36_0
pyaccumulo 1.5.0.9 py_0 local
pyaml 17.12.1 py_0 conda-forge
pyarrow 0.10.0 py36hfc679d8_0 conda-forge
pyasn1 0.4.3 py36_0
pyasn1 0.4.2 <pip>
pyasn1-modules 0.2.1 py36h1776605_0
pyasn1-modules 0.2.1 <pip>
pybind11 2.2.1 <pip>
pycodestyle 2.3.1 py36h83e8646_0
pycosat 0.6.3 py36hee92d8f_0
pycparser 2.18 py36h724b2fc_1
pycryptodome 3.7.1 py36h16a7912_0 conda-forge
pydap 3.2.1 py36_0 conda-forge
pydicom 1.1.0 py_0 conda-forge
pyflakes 0.8.1 <pip>
pyflakes 1.6.0 py36hea45e83_0
pyftpdlib 1.5.4 py_1 conda-forge
pygithub 1.39 py36_0 conda-forge
pygments 2.2.0 py36h240cd3f_0
pyjwt 1.6.4 py36_0
pykerberos 1.2.1 py36h1de35cc_0
pylint 1.8.3 py36_0
pymongo 3.4.0 py36_0
pympler 0.5 py36hc2752d1_0
pynacl 1.3.0 py36h1de35cc_0
pyopengl 3.1.1a1 py36_0
pyopenssl 17.5.0 py36h51e4350_0
pyparsing 2.2.0 py36hb281f35_0
pypdf2 1.26.0 py36_1 conda-forge
pyproj 1.9.5.1 py36h508ed2a_5 conda-forge
pyqt 5.9.2 py36h11d3b92_0
pysocks 1.6.8 py36_0
pysolr 3.6.0 py36_0 conda-forge
pyspark 2.4.0 py36_0
pytables 3.4.4 py36h13cba08_0
pytest 3.10.1 py36_0
pytest-arraydiff 0.2 py36_0
pytest-astropy 0.2.1 py36_0
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