Hi,
I run Telseq with no errors:
time telseq -o hTSC_1810-001_output add-hTSC-1810-001.aln.bam
[add-hTSC-1810-001.aln.bam]
1 BAMs
Start analysing BAM add-hTSC-1810-001.aln.bam
Specified BAM has 1 read groups
[scan] processed 10000000 reads
[scan] processed 20000000 reads
[scan] processed 30000000 reads
[scan] processed 40000000 reads
[scan] processed 50000000 reads
[scan] processed 60000000 reads
[scan] processed 70000000 reads
[scan] processed 80000000 reads
[scan] processed 90000000 reads
[scan] processed 100000000 reads
[scan] processed 110000000 reads
[scan] processed 120000000 reads
[scan] processed 130000000 reads
[scan] processed 140000000 reads
[scan] processed 150000000 reads
[scan] processed 160000000 reads
[scan] processed 170000000 reads
[scan] processed 180000000 reads
[scan] processed 190000000 reads
[scan] processed 200000000 reads
[scan] processed 210000000 reads
[scan] processed 220000000 reads
[scan] processed 230000000 reads
[scan] processed 240000000 reads
[scan] processed 250000000 reads
[scan] processed 260000000 reads
[scan] processed 270000000 reads
[scan] processed 280000000 reads
[scan] processed 290000000 reads
[scan] processed 300000000 reads
[scan] processed 310000000 reads
[scan] processed 320000000 reads
[scan] processed 330000000 reads
[scan] processed 340000000 reads
[scan] processed 350000000 reads
[scan] processed 360000000 reads
[scan] processed 370000000 reads
[scan] processed 380000000 reads
[scan] processed 390000000 reads
[scan] processed 400000000 reads
[scan] processed 410000000 reads
[scan] processed 420000000 reads
[scan] processed 430000000 reads
[scan] processed 440000000 reads
[scan] processed 450000000 reads
[scan] processed 460000000 reads
[scan] processed 470000000 reads
[scan] processed 480000000 reads
[scan] processed 490000000 reads
[scan] processed 500000000 reads
[scan] processed 510000000 reads
[scan] processed 520000000 reads
[scan] processed 530000000 reads
[scan] processed 540000000 reads
[scan] processed 550000000 reads
[scan] processed 560000000 reads
[scan] processed 570000000 reads
[scan] processed 580000000 reads
[scan] processed 590000000 reads
[scan] processed 600000000 reads
[scan] processed 610000000 reads
[scan] processed 620000000 reads
[scan] processed 630000000 reads
[scan] total reads in BAM scanned 636569520
Completed scanning BAM
Completed writing results
[timer - scan BAM] wall clock: 3817.49s CPU: 3805.32s
real 63m37.503s
user 63m15.347s
sys 0m9.974s
The output is empty. Is there something wrong with my input data? (input was NovaSeq 2x100 30x coverage human genome)
Hi,
I run Telseq with no errors:
time telseq -o hTSC_1810-001_output add-hTSC-1810-001.aln.bam
[add-hTSC-1810-001.aln.bam]
1 BAMs
Start analysing BAM add-hTSC-1810-001.aln.bam
Specified BAM has 1 read groups
[scan] processed 10000000 reads
[scan] processed 20000000 reads
[scan] processed 30000000 reads
[scan] processed 40000000 reads
[scan] processed 50000000 reads
[scan] processed 60000000 reads
[scan] processed 70000000 reads
[scan] processed 80000000 reads
[scan] processed 90000000 reads
[scan] processed 100000000 reads
[scan] processed 110000000 reads
[scan] processed 120000000 reads
[scan] processed 130000000 reads
[scan] processed 140000000 reads
[scan] processed 150000000 reads
[scan] processed 160000000 reads
[scan] processed 170000000 reads
[scan] processed 180000000 reads
[scan] processed 190000000 reads
[scan] processed 200000000 reads
[scan] processed 210000000 reads
[scan] processed 220000000 reads
[scan] processed 230000000 reads
[scan] processed 240000000 reads
[scan] processed 250000000 reads
[scan] processed 260000000 reads
[scan] processed 270000000 reads
[scan] processed 280000000 reads
[scan] processed 290000000 reads
[scan] processed 300000000 reads
[scan] processed 310000000 reads
[scan] processed 320000000 reads
[scan] processed 330000000 reads
[scan] processed 340000000 reads
[scan] processed 350000000 reads
[scan] processed 360000000 reads
[scan] processed 370000000 reads
[scan] processed 380000000 reads
[scan] processed 390000000 reads
[scan] processed 400000000 reads
[scan] processed 410000000 reads
[scan] processed 420000000 reads
[scan] processed 430000000 reads
[scan] processed 440000000 reads
[scan] processed 450000000 reads
[scan] processed 460000000 reads
[scan] processed 470000000 reads
[scan] processed 480000000 reads
[scan] processed 490000000 reads
[scan] processed 500000000 reads
[scan] processed 510000000 reads
[scan] processed 520000000 reads
[scan] processed 530000000 reads
[scan] processed 540000000 reads
[scan] processed 550000000 reads
[scan] processed 560000000 reads
[scan] processed 570000000 reads
[scan] processed 580000000 reads
[scan] processed 590000000 reads
[scan] processed 600000000 reads
[scan] processed 610000000 reads
[scan] processed 620000000 reads
[scan] processed 630000000 reads
[scan] total reads in BAM scanned 636569520
Completed scanning BAM
Completed writing results
[timer - scan BAM] wall clock: 3817.49s CPU: 3805.32s
real 63m37.503s
user 63m15.347s
sys 0m9.974s
The output is empty. Is there something wrong with my input data? (input was NovaSeq 2x100 30x coverage human genome)