Hey, I encountered the following issue when using DeepCIP with python DeepCIP.py -n nano -i nanofl.fa command:
Pre-process data not found in Graph_Data/processed/nano_rna_graph.pt, pre-processing...
Traceback (most recent call last):
File "DeepCIP.py", line 196, in <module>
DeepCIP_predict()
File "DeepCIP.py", line 117, in DeepCIP_predict
data_test = RNAGraphDataset(dataset=args.data_name, rna_graph=pred_struc_dir,\
File "create_graph_predict.py", line 50, in compiles.create_graph_predict.RNAGraphDataset.__init__
File "create_graph_predict.py", line 91, in compiles.create_graph_predict.RNAGraphDataset.process
File "create_graph_predict.py", line 30, in compiles.create_graph_predict.Process_data.make_data
KeyError: 't'
Could you please help me with this issue?
My fasta is as follows:
pm1_11-259593-260152_pm1_11-259592-260152
TTTTCAAACAGGGAGGCGTAAGTGGGATAATTGAACATTACATTCTGATGCTAATACATGCAAAGACATCCAATACATGTTCTCAAAGGCACCATCAAACAGCCTATTGTTACTGGGAGACCCGCTATTGAAAGCAATTCAGGCTAGTAACCAATGGGCAGTGGATAGAAAATTGGAAGAAGCCAGGACTGGCTGTATCACCATACTGATCCCAGCAGGGAAAAATGAAGACGTTTCCGTCAACATATTGGTGGGCCGTGTTCAAGGGCTTGAAATGCTTAACACGTTCATGATGGAGCGGATCTGGTCAGCCTCACATACCCATCAATCACTTCTACCTCACATCCAGCAGGAACAGCATGAACCTCATCCTTTTTGATTTCTCTCAAGTCCAAATACGGCTCAGTTGCATTGGGATCCGATATCCTGATTAAGGCACCCCTGCATTTTATTGTTCTGTTGAAGTCTTCTTTTGGAAATATGCGACCGCGGATATAGGGAAGATCTTTGTCATTGATATCATCGACTTGAGCCTAAATTCGGGGTTTTCAAGTTAGTTC
pm1_11-266839-267120_pm1_11-266838-267120
CGGAGAAGTCCACATTGAAAAAGCAATCAACAAATTCTCGCACGAATCAATGTTACTCGGAAGCCCACCAAAGATCTCAAGCTCTTGTCACTATAATTTCCCGGACCCATATCTTACTGCAATCCTTTAGTACAGGGCCACGCCTGGTGCGGTAGACTTACGTACAGGGTCAAACTCTGGCCCAGGAGATCAGGTTTCTCGAAACGATCCCAGAAACAGTCTGCATCATCACTTCTCAATGTCAGTTCTGTCGACTGGGAAATAAATGGCAAAACATACCCG
Hey, I encountered the following issue when using DeepCIP with
python DeepCIP.py -n nano -i nanofl.fa command:Could you please help me with this issue?
My fasta is as follows: