what is the best resol for low Hi-C data #2
Description
Hi,
As indicated in the paper, RobustTAD can be applied to detect TADs for low coverage data, such as 62.5M.
I would like to inquire about the appropriate value for the "resol" parameter. Should I maintain the current setting of 5000, or would it be better to adjust it to a higher value, such as 50000?
And if it is set to 50000, should I increase the minW and maxW to 5x and 12x of the resolution?
Best,
Junfeng