diversity_length_correlation

This repository holds scripts and (meta)data corresponding to the study: Patterns of change in nucleotide diversity over gene length (2023)

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
data		data
README.md		README.md
WF_purifySel.slim		WF_purifySel.slim
asr_nls_meansitediv_gaussnewton.R		asr_nls_meansitediv_gaussnewton.R
divlencor_vs_leff.R		divlencor_vs_leff.R
extract_sim_params_species_data.R		extract_sim_params_species_data.R
figure_sims.R		figure_sims.R
filter_ncbi_assembly_summary.py		filter_ncbi_assembly_summary.py
generate_cds_prot_recs.py		generate_cds_prot_recs.py
generate_msa.py		generate_msa.py
generate_rnass_profiles.R		generate_rnass_profiles.R
generate_xmfa.py		generate_xmfa.py
jacdis_fts.py		jacdis_fts.py
mean_gr_cub_bacs.R		mean_gr_cub_bacs.R
meansitediv.R		meansitediv.R
nucdiv_by_site.py		nucdiv_by_site.py
plot_figure1.R		plot_figure1.R
plot_figure2.R		plot_figure2.R
plot_figure3.R		plot_figure3.R
plot_leff_correlates.R		plot_leff_correlates.R
predict_growthrate_cub_grodon.R		predict_growthrate_cub_grodon.R
regression_confounders.R		regression_confounders.R
regression_growthrate.R		regression_growthrate.R
regression_rec.R		regression_rec.R
regression_rna_sec_struct.R		regression_rna_sec_struct.R
rm_plasmid.py		rm_plasmid.py
rnass_effects_molina.R		rnass_effects_molina.R
rnass_gene_site_prob.py		rnass_gene_site_prob.py
run_slim.py		run_slim.py
select_strains_dmat.py		select_strains_dmat.py
simsp_Ne.R		simsp_Ne.R
site_degeneracy.py		site_degeneracy.py
tab_mcorr_out.py		tab_mcorr_out.py

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