R Scipts used to determine MLST loci for Dichelobacter nodosus scheme Database avalible at https://pubmlst.org/dnodosus/
Used to detemine number of sequence types from a random permutation of loci
Serogroup determination using IPCRESS
Slater, G.S.C. & Birney, E., 2005. Automated generation of heuristics for biological sequence comparison. BMC bioinformatics, 6, p.31
ipcress --input ipcress_serogroup.txt -p -P --sequence isolate.fasta > isolate_serogroup.txt