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@zadyson zadyson commented Feb 19, 2025

Updated to parse data in AMRgen genotype data frame format.

Notes:

  • may need to handle contig information if included in raw data (currently appended to sample ID creating a many to one relationship for some test data) but this could be something for the user to sort out before using the package.
  • drug columns needs updating with as.ab() function when available.

Updated to parse data in AMRgen genotype data frame format. 

Notes:
- may need to handle contig information if included in raw data (currently appended to sample ID creating a many to one relationship for some test data) but this could be something for the user to sort out before using the package.
- drug columns needs updating with as.ab() function when available.
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