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Bump the pip-deps group across 1 directory with 3 updates #54

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Updates the requirements on zarr, ruff and mypy to permit the latest version.
Updates zarr to 3.1.5

Release notes

Sourced from zarr's releases.

v3.1.5

What's Changed

Full Changelog: zarr-developers/zarr-python@v3.1.4...v3.1.5

Changelog

Sourced from zarr's changelog.

zarr 3.1.5 (2025-11-21)

Bugfixes

  • Fix formatting errors in the release notes section of the docs. (#3594)

3.1.4 (2025-11-20)

Features

  • The Array class can now also be parametrized in the same manner as the AsyncArray class, allowing Zarr format v2 and v3 Arrays to be distinguished. New types have been added to zarr.types to help with this. (#3304)
  • Adds zarr.experimental.cache_store.CacheStore, a Store that implements caching by combining two other Store instances. See the docs page for more information about this feature. (#3366)
  • Adds a zarr.experimental module for unstable user-facing features. (#3490)
  • Add a array.target_shard_size_bytes to [zarr.config][] to allow users to set a maximum number of bytes per-shard when shards="auto" in, for example, [zarr.create_array][]. (#3547)
  • Make async_array on the [zarr.Array][] class public (_async_array will remain untouched, but its stability is not guaranteed). (#3556)

Bugfixes

  • Fix a bug that prevented PCodec from being properly resolved when loading arrays using that compressor. (#3483)
  • Fixed a bug that prevented Zarr Python from opening Zarr V3 array metadata documents that contained extra keys with permissible values (dicts with a "must_understand" key set to "false"). (#3530)
  • Fixed a bug where the "consolidated_metadata" key was written to metadata documents even when consolidated metadata was not used, resulting in invalid metadata documents. (#3535)
  • Improve write performance to large shards by up to 10x. (#3560)

Improved Documentation

  • Use mkdocs-material for Zarr-Python documentation (#3118)
  • Document different values of StoreLike with examples in the user guide. (#3303)
  • Reorganize the top-level examples directory to give each example its own sub-directory. Adds content to the docs for each example. (#3502)
  • Updated 3.0 Migration Guide to include function signature change to zarr.Array.resize function. (#3536)

Misc

zarr 3.1.3 (2025-09-18)

Features

  • Add a command-line interface to migrate v2 Zarr metadata to v3. Corresponding functions are also provided under zarr.metadata. (#1798)
  • Add obstore implementation of delete_dir. (#3310)
  • Adds a registry for chunk key encodings for extensibility. This allows users to implement a custom ChunkKeyEncoding, which can be registered via register_chunk_key_encoding or as an entry point under zarr.chunk_key_encoding. (#3436)
  • Trying to open a group at a path where an array already exists now raises a helpful error. (#3444)

Bugfixes

... (truncated)

Commits

Updates ruff from 0.14.7 to 0.14.9

Release notes

Sourced from ruff's releases.

0.14.9

Release Notes

Released on 2025-12-11.

Preview features

  • [ruff] New RUF100 diagnostics for unused range suppressions (#21783)
  • [pylint] Detect subclasses of builtin exceptions (PLW0133) (#21382)

Bug fixes

  • Fix comment placement in lambda parameters (#21868)
  • Skip over trivia tokens after re-lexing (#21895)
  • [flake8-bandit] Fix false positive when using non-standard CSafeLoader path (S506). (#21830)
  • [flake8-bugbear] Accept immutable slice default arguments (B008) (#21823)

Rule changes

  • [pydocstyle] Suppress D417 for parameters with Unpack annotations (#21816)

Performance

  • Use memchr for computing line indexes (#21838)

Documentation

  • Document *.pyw is included by default in preview (#21885)
  • Document range suppressions, reorganize suppression docs (#21884)
  • Update mkdocs-material to 9.7.0 (Insiders now free) (#21797)

Contributors

Install ruff 0.14.9

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/astral-sh/ruff/releases/download/0.14.9/ruff-installer.sh | sh

... (truncated)

Changelog

Sourced from ruff's changelog.

0.14.9

Released on 2025-12-11.

Preview features

  • [ruff] New RUF100 diagnostics for unused range suppressions (#21783)
  • [pylint] Detect subclasses of builtin exceptions (PLW0133) (#21382)

Bug fixes

  • Fix comment placement in lambda parameters (#21868)
  • Skip over trivia tokens after re-lexing (#21895)
  • [flake8-bandit] Fix false positive when using non-standard CSafeLoader path (S506). (#21830)
  • [flake8-bugbear] Accept immutable slice default arguments (B008) (#21823)

Rule changes

  • [pydocstyle] Suppress D417 for parameters with Unpack annotations (#21816)

Performance

  • Use memchr for computing line indexes (#21838)

Documentation

  • Document *.pyw is included by default in preview (#21885)
  • Document range suppressions, reorganize suppression docs (#21884)
  • Update mkdocs-material to 9.7.0 (Insiders now free) (#21797)

Contributors

0.14.8

Released on 2025-12-04.

Preview features

  • [flake8-bugbear] Catch yield expressions within other statements (B901) (#21200)
  • [flake8-use-pathlib] Mark fixes unsafe for return type changes (PTH104, PTH105, PTH109, PTH115) (#21440)

... (truncated)

Commits
  • 3f63ea4 Prepare 0.14.9 release (#21927)
  • c8851ec [ty] Defer all parameter and return type annotations (#21906)
  • d442433 [ty] Fix workspace symbols to return members too (#21926)
  • c055d66 Document range suppressions, reorganize suppression docs (#21884)
  • 7a578ce Ignore ruff:isort like ruff:noqa in new suppressions (#21922)
  • 34f7a04 [ty] Handle Definitions in SemanticModel::scope (#21919)
  • c9fe4e2 [ty] Attach salsa db when running ide tests for easier debugging (#21917)
  • fbeeb05 [ty] Don't show hover for expressions with no inferred type (#21924)
  • 4fdb4e8 [ty] avoid unions of generic aliases of the same class in fixpoint (#21909)
  • c548ef2 [ty] Squash false positive logs for failing to find builtins as a real module
  • Additional commits viewable in compare view

Updates mypy from 1.19.0 to 1.19.1

Changelog

Sourced from mypy's changelog.

Mypy 1.19.1

  • Fix noncommutative joins with bounded TypeVars (Shantanu, PR 20345)
  • Respect output format for cached runs by serializing raw errors in cache metas (Ivan Levkivskyi, PR 20372)
  • Allow types.NoneType in match cases (A5rocks, PR 20383)
  • Fix mypyc generator regression with empty tuple (BobTheBuidler, PR 20371)
  • Fix crash involving Unpack-ed TypeVarTuple (Shantanu, PR 20323)
  • Fix crash on star import of redefinition (Ivan Levkivskyi, PR 20333)
  • Fix crash on typevar with forward ref used in other module (Ivan Levkivskyi, PR 20334)
  • Fail with an explicit error on PyPy (Ivan Levkivskyi, PR 20389)

Acknowledgements

Thanks to all mypy contributors who contributed to this release:

  • A5rocks
  • BobTheBuidler
  • bzoracler
  • Chainfire
  • Christoph Tyralla
  • David Foster
  • Frank Dana
  • Guo Ci
  • iap
  • Ivan Levkivskyi
  • James Hilton-Balfe
  • jhance
  • Joren Hammudoglu
  • Jukka Lehtosalo
  • KarelKenens
  • Kevin Kannammalil
  • Marc Mueller
  • Michael Carlstrom
  • Michael J. Sullivan
  • Piotr Sawicki
  • Randolf Scholz
  • Shantanu
  • Sigve Sebastian Farstad
  • sobolevn
  • Stanislav Terliakov
  • Stephen Morton
  • Theodore Ando
  • Thiago J. Barbalho
  • wyattscarpenter

I’d also like to thank my employer, Dropbox, for supporting mypy development.

Mypy 1.18

We’ve just uploaded mypy 1.18.1 to the Python Package Index (PyPI). Mypy is a static type checker for Python. This release includes new features, performance

... (truncated)

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@dependabot
Bump the pip-deps group across 1 directory with 3 updates
20910f9 
Updates the requirements on [zarr](https://github.com/zarr-developers/zarr-python), [ruff](https://github.com/astral-sh/ruff) and [mypy](https://github.com/python/mypy) to permit the latest version.

Updates `zarr` to 3.1.5
- [Release notes](https://github.com/zarr-developers/zarr-python/releases)
- [Changelog](https://github.com/zarr-developers/zarr-python/blob/main/docs/release-notes.md)
- [Commits](zarr-developers/zarr-python@v0.0.0...v3.1.5)

Updates `ruff` from 0.14.7 to 0.14.9
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.14.7...0.14.9)

Updates `mypy` from 1.19.0 to 1.19.1
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v1.19.0...v1.19.1)

---
updated-dependencies:
- dependency-name: zarr
  dependency-version: 3.1.5
  dependency-type: direct:production
  dependency-group: pip-deps
- dependency-name: ruff
  dependency-version: 0.14.9
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-deps
- dependency-name: mypy
  dependency-version: 1.19.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pip-deps
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added bumpless Changes to documentation, CI/CD pipelines, etc., that don't affect the project's version major Bump the major version number of this project labels Dec 15, 2025
@dependabot dependabot bot requested review from a team as code owners December 15, 2025 21:25
@dependabot dependabot bot added major Bump the major version number of this project bumpless Changes to documentation, CI/CD pipelines, etc., that don't affect the project's version labels Dec 15, 2025
jhkennedy
jhkennedy requested changes Jan 9, 2026
View reviewed changes
pyproject.toml
"tenacity",
"virtualizarr",
"xstac >= 0.1.0",
"zarr<=3.0.0a",
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@jhkennedy jhkennedy Jan 9, 2026

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I don't think we're ready for Zarr v3 yet... will need to turn this off in dependabot until we do upgrade.

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