AbUndMax

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learning the „informatics“-part in Bioinformatics

Niklas Max G. AbUndMax

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learning the „informatics“-part in Bioinformatics

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Biologist with specialization in plant-physiology 🌱🧪 Currently M.sc graduate student in Bioinformatics 💻🧬

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Eberhard Karls University Tübingen
Stuttgart
02:07 (UTC +02:00)

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AbUndMax/README.md

🌿 Hi, I'm @AbUndMax

I have a degree in Biology with specialization in plant-physiology 🧬.

🎈 So what am I doing here?

A few years ago I went into first coding experiences with python. With growing experiences and joy I started a Master in Bioinformatics.

💻 My experiences:

I’m still learning! especially in Data Science!
But I have good coding knowledge in Java☕️ and Python🐍

</> What`s to see here?

My most recent project BodyParts3D Anatomy Explorer which uses JavaFX to create a native application for interactive exploration of the human body using assets and concepts from the BodyParts 3D database (Mitsuhashi et al.).
A package to make parsing command line arguments in Java a little bit easier with a Java_ArgsParser
You can find my very first coding projects in Java and Racket like a Calculator, a cat hunting your mous game or a Towers of Hanoi minigame
But also some of my first bigger projects like an Organizer
My first steps in Bioinformatics with a DNA-Complementary App, a simple SNV-caller or a basic ChIP-seq peak-caller.
My most advanced bioinformatics project yet, implementing a progressive alignment program for MSAs
Or other helpful stuff like a CSV-Comparator or simple loading animations for CLI-python- or java-scripts

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BodyParts3D_Anatomy_Explorer BodyParts3D_Anatomy_Explorer Public

This is an anatomy-explorer tool that shows a 3D Model of the Human Body and allows for interactions and exploration. It is Based on the BodyParts 3D concept relations and wavefront files. (Mitsuha…

Java 2
Java_ArgsParser Java_ArgsParser Public

Simple implementation of an lightweight argument parser for Java

Java 1 1
HoldMyCoffee HoldMyCoffee Public

Loading animation library for CLI tools written in Java

Java 1
CSVcomparator-Batch-Program CSVcomparator-Batch-Program Public

a small batch program which compares two csv files (specifically if booth files are differently sorted / columns are differently named! - only condition is that each row has a label for the row (e.…

Python 1
SNVcaller SNVcaller Public

simple implementation of a Single Nucleotide Variant caller that uses pileup files as input and returns a Variant Call Format (.vcf) file

Python 1
progressiveAligner progressiveAligner Public

This is a simple implementation of a Multiple Sequence Alignment (MSA) program by using a progressive aligner and consensus sequences as profile-profile technique.

Java 1