Search results

Feature: Target site reconstruction

Status: Open.

#29 In Adamtaranto/TIRmite;

· Adamtaranto opened on Jan 14, 2026

Add BLAST as an alternative search engine

Status: Open.

#28 In Adamtaranto/TIRmite;

· Adamtaranto opened on Jan 14, 2026

Implement ensemble HMM search

enhancement

Status: Open.

#12 In Adamtaranto/TIRmite;

· Adamtaranto opened on Oct 19, 2023

How to get or prepare TIR_A.hmm file?

Status: Open.

#11 In Adamtaranto/TIRmite;

· xiekunwhy opened on Jul 21, 2022

Index reference genome

enhancement

Status: Open.

#10 In Adamtaranto/TIRmite;

· Adamtaranto opened on Apr 8, 2021

Duplicate GFF lines in pairbed mode

bug

Status: Open.

#9 In Adamtaranto/TIRmite;

· Adamtaranto opened on Jan 29, 2020

Add bed fmt output opt

enhancement

Status: Open.

#8 In Adamtaranto/TIRmite;

· Adamtaranto opened on Jan 29, 2020

Mod flanking bases option

enhancement

Status: Open.

#7 In Adamtaranto/TIRmite;

· Adamtaranto opened on Jan 27, 2020

Dies if filtering empty hit table

bug

Status: Open.

#6 In Adamtaranto/TIRmite;

· Adamtaranto opened on Jan 20, 2020

Add event logs + checks

enhancement

Status: Open.

#5 In Adamtaranto/TIRmite;

· Adamtaranto opened on Jan 13, 2020

Post Processing Tools

enhancement

Status: Open.

#4 In Adamtaranto/TIRmite;

· Adamtaranto opened on May 28, 2019