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Status: Open.

#1760 In AlexsLemonade/OpenPBTA-analysis;

· jaclyn-taroni opened on Jun 19, 2023

MRAN will be retired July 1, 2023

Status: Open.

#1641 In AlexsLemonade/OpenPBTA-analysis;

· jaclyn-taroni opened on Jan 3, 2023

Revision: Run and assess relevant survival models at threshold

revisionRelated to manuscript revisionsRelated to manuscript revisions

wontfixThis will not be worked onThis will not be worked on

Status: Open.

#1627 In AlexsLemonade/OpenPBTA-analysis;

· sjspielman opened on Dec 12, 2022

Differences in mitochondrially-encoded gene expression between RNA-seq samples sequenced at BGI@CHOP vs. NantOmics

data

Status: Open.

#1601 In AlexsLemonade/OpenPBTA-analysis;

· jaclyn-taroni opened on Aug 12, 2022

When MRAN is down, the build fails

discussion

Status: Open.

#1250 In AlexsLemonade/OpenPBTA-analysis;

· sjspielman opened on Mar 21, 2022

CI can fail due to docker time outs

ciRelated to continuous integrationRelated to continuous integration

discussion

Status: Open.

#1225 In AlexsLemonade/OpenPBTA-analysis;

· sjspielman opened on Feb 16, 2022

Updated analysis: independent rna sample list selection

bugSomething isn't workingSomething isn't working

Status: Open.

#1103 In AlexsLemonade/OpenPBTA-analysis;

· kgaonkar6 opened on Jun 23, 2021

BS_WSFB4SA2 has BRAF p.V504_R506dup within kinase domain but not in hotspot INDEL file

data

Status: Open.

#1058 In AlexsLemonade/OpenPBTA-analysis;

· jharenza opened on May 10, 2021

Updated analysis: histology-treemap.html is broken -- probably delete it?

updated analysis

Status: Open.

#920 In AlexsLemonade/OpenPBTA-analysis;

· cansavvy opened on Jan 22, 2021

Proposed Analysis: Batch effects in RNA-seq data

proposed analysis

Status: Open.

#919 In AlexsLemonade/OpenPBTA-analysis;

· natemella opened on Jan 21, 2021

Question: Do we expect many participant IDs to be associated with more than one <code>harmonized_diagnosis</code>?

data

questionFurther information is requestedFurther information is requested

Status: Open.

#913 In AlexsLemonade/OpenPBTA-analysis;

· jaclyn-taroni opened on Jan 16, 2021

Rerun analysis: comparative-RNASeq-analysis

updated analysis

Status: Open.

#895 In AlexsLemonade/OpenPBTA-analysis;

· jashapiro opened on Jan 8, 2021