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Update Bonsai to version 2.9#1625

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bruno-f-cruz wants to merge 1 commit intodevelopfrom
reafator-update-bonsai-29
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Update Bonsai to version 2.9#1625
bruno-f-cruz wants to merge 1 commit intodevelopfrom
reafator-update-bonsai-29

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@bruno-f-cruz
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@bruno-f-cruz bruno-f-cruz commented Oct 3, 2025

This PR updates the bonsai to the latest version (2.9). It also tries to update packages to a more recent version. I tried to be careful and only update packages I was fairly certain wouldn't lead to issues.

This PR should be tested in a few long sessions to make sure everything is working as intended.
Once it is tested, there are a few QOL worth considering before merging this PR:

  • Refactor the way visualizers are launched and get rid of committed layout files

@micahwoodard
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@bruno-f-cruz has this branch been initially debugged to at least launch the gui and start a session? @ellahiltonvano can test a few longer sessions but I wanted to make sure it's in "working" condition before hand

@bruno-f-cruz
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Nop. This needs testing.

@micahwoodard
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@bruno-f-cruz okay great I can try and test sometime this week

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