Open
Conversation
Co-authored-by: Tristan Garwood <tristan.garwood@gmail.com> Co-authored-by: Adam Nichols <anichols@broadinstitute.org> Co-authored-by: Janet Gainer-Dewar <jdewar@broadinstitute.org>
Co-authored-by: Tom Wiseman <twiseman@broadinstitute.org>
Co-authored-by: Adam Nichols <aednichols@gmail.com>
…#7457) After playing a while with GCP Batch: 1. Batch can automatically retry preemption errors. 2. When Batch retries, there is no signal in the Job status events, we need to check the VM logs. 3. Cromwell does not get any details about Batch retries, hence, the same jobId is kept even if a VM is recreated. 4. When the job status events mention that the job failed due to a preemption error, this is final, Batch already exhausted the retries. This removes all the code related to handling preemption errors and parses the job status events to derive the failure reason. Also, this tries detecting the other potential exit codes mapping them to a better error message. Refs: - [Batch automated task retries](https://cloud.google.com/batch/docs/automate-task-retries) - [Batch exit codes](https://cloud.google.com/batch/docs/troubleshooting#reserved-exit-codes)
Co-authored-by: SophiaPerzan-DG <sophia.perzan@deepgenomics.com>
Co-authored-by: Adam Nichols <aednichols@gmail.com>
Co-authored-by: Liz Baldo <lizbaldo@Liz-Baldo-H5267Y2XDX.local>
Co-authored-by: Liz Baldo <lizbaldo@Liz-Baldo-H5267Y2XDX.local>
Co-authored-by: Liz Baldo <lizbaldo@Liz-Baldo-H5267Y2XDX.local>
Co-authored-by: Liz Baldo <lizbaldo@Liz-Baldo-H5267Y2XDX.local>
Co-authored-by: Liz Baldo <lizbaldo@Liz-Baldo-H5267Y2XDX.local>
Co-authored-by: Liz Baldo <lizbaldo@Liz-Baldo-H5267Y2XDX.local>
Co-authored-by: Liz Baldo <lizbaldo@Liz-Baldo-H5267Y2XDX.local>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
20 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.