Add plotheatmap_leadingedge_GSEA function with roxygen2 documentation and export#25
Merged
danoguevara merged 3 commits intoBigMindLab:mainfrom Jul 26, 2025
Merged
Conversation
Introduce a new function, plotheatmap_leadingedge_GSEA(), which: - Reads GMT, GSEA results, ranked gene lists, expression and metadata files. - Extracts leading-edge genes and optionally saves the merged dataframe. - Generates per-geneset heatmaps (PDF + JPG) under output_dir. Includes full roxygen2 header for documentation.
Provide Rd file with usage, arguments, details and examples for plotheatmap_leadingedge_GSEA().
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This pull request introduces the new function plotheatmap_leadingedge_GSEA(), which automates the generation of annotated heatmaps based on leading-edge genes derived from GSEA results.
Main contributions:
Files modified or added:
R/plotheatmap_leadingedge_GSEA.R:Function implementation with roxygen2 documentation.NAMESPACE: Export statement to make the function available to users.man/plotheatmap_leadingedge_GSEA.Rd: Documentation generated via roxygen2.