Add rworkflows

.Rbuildignore

@@ -0,0 +1,2 @@
+^.*\.Rproj$
+^\.Rproj\.user$

.github/workflows/rworkflows.yml

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+name: rworkflows
+'on':
+  push:
+    branches:
+    - master
+    - main
+    - devel
+    - RELEASE_**
+  pull_request:
+    branches:
+    - master
+    - main
+    - devel
+    - RELEASE_**
+jobs:
+  rworkflows:
+    permissions:
+      contents: write
+    runs-on: ${{ matrix.config.os }}
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+    container: ${{ matrix.config.cont }}
+    strategy:
+      fail-fast: ${{ false }}
+      matrix:
+        config:
+        - os: ubuntu-latest
+          bioc: devel
+          r: auto
+          cont: bioconductor/bioconductor_docker:devel
+          rspm: https://packagemanager.rstudio.com/cran/__linux__/focal/release
+        - os: macOS-latest
+          bioc: release
+          r: auto
+          cont: ~
+          rspm: ~
+        - os: windows-latest
+          bioc: release
+          r: auto
+          cont: ~
+          rspm: ~
+    steps:
+    - uses: neurogenomics/rworkflows@master
+      with:
+        run_bioccheck: ${{ false }}
+        run_rcmdcheck: ${{ true }}
+        as_cran: ${{ true }}
+        run_vignettes: ${{ true }}
+        has_testthat: ${{ true }}
+        run_covr: ${{ true }}
+        run_pkgdown: ${{ true }}
+        has_runit: ${{ false }}
+        has_latex: ${{ false }}
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run_docker: ${{ false }}
+        DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }}
+        runner_os: ${{ runner.os }}
+        cache_version: cache-v1

.gitignore

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+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata
+*.RProj

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: GenomicFiles
 Title: Distributed computing by file or by range
 Description: This package provides infrastructure for parallel 
-	computations distributed 'by file' or 'by range'. User 
+	computations distributed 'by file' or 'by range'. User- 
 	defined MAPPER and REDUCER functions provide added 
 	flexibility for data combination and manipulation.
 Version: 1.37.0
@@ -33,6 +33,7 @@ Collate: GenomicFiles-class.R
     unpack-methods.R
     registry.R
     zzz.R
+URL: https://github.com/Bioconductor/GenomicFiles
 Video: https://www.youtube.com/watch?v=3PK_jx44QTs
 RoxygenNote: 6.1.0
 VignetteBuilder: knitr

README.Rmd

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+---
+title: "`r read.dcf('DESCRIPTION', fields = 'Package')[1]`"  
+author: "`r rworkflows::use_badges()`" 
+date: "<h4>README updated: <i>`r format( Sys.Date(), '%b-%d-%Y')`</i></h4>"
+output:
+  github_document
+---
+
+<!-- To modify Package/Title/Description/Authors fields, edit the DESCRIPTION file -->
+
+```{r, echo=FALSE, include=FALSE}
+pkg <- read.dcf("DESCRIPTION", fields = "Package")[1]
+title <- read.dcf("DESCRIPTION", fields = "Title")[1]
+description <- read.dcf("DESCRIPTION", fields = "Description")[1]
+URL <- read.dcf('DESCRIPTION', fields = 'URL')[1]
+owner <- tolower(strsplit(URL,"/")[[1]][4])
+```
+
+## ``r pkg``: `r title`
+
+### `r gsub("\n","",description)`
+
+If you use ``r pkg``, please cite: 
+
+<!-- Modify this by editing the file: inst/CITATION  -->
+> `r utils::citation(pkg)$textVersion`
+
+## Installation 
+
+```R
+if (!require("BiocManager", quietly = TRUE))
+    install.packages("BiocManager")
+
+BiocManager::install("`r pkg`")
+```
+## Documentation 
+
+### [Website](https://`r owner`.github.io/`r pkg`) 
+### [Get started](https://`r owner`.github.io/`r pkg`/articles/`r pkg`) 
+
+<br>

README.md

@@ -1,5 +1,45 @@
 GenomicFiles
-=========
+================
+NULL [![License:
+Artistic-2.0](https://img.shields.io/badge/license-Artistic--2.0-blue.svg)](https://cran.r-project.org/web/licenses/Artistic-2.0)
+[![](https://img.shields.io/badge/devel%20version-1.37.0-black.svg)](https://github.com/Bioconductor/GenomicFiles)
+[![](https://img.shields.io/github/languages/code-size/Bioconductor/GenomicFiles.svg)](https://github.com/Bioconductor/GenomicFiles)
+[![](https://img.shields.io/github/last-commit/Bioconductor/GenomicFiles.svg)](https://github.com/Bioconductor/GenomicFiles/commits/master)
+<br> [![R build
+status](https://github.com/Bioconductor/GenomicFiles/workflows/rworkflows/badge.svg)](https://github.com/Bioconductor/GenomicFiles/actions)
+[![](https://codecov.io/gh/Bioconductor/GenomicFiles/branch/master/graph/badge.svg)](https://app.codecov.io/gh/Bioconductor/GenomicFiles)
+<br>
+<a href='https://app.codecov.io/gh/Bioconductor/GenomicFiles/tree/master' target='_blank'><img src='https://codecov.io/gh/Bioconductor/GenomicFiles/branch/master/graphs/icicle.svg' title='Codecov icicle graph' width='200' height='50' style='vertical-align: top;'></a>  
+<h4>  
+Authors: <i></i>  
+</h4>
+<h4>  
+README updated: <i>Sep-01-2023</i>  
+</h4>
 
-Distributed computing by file or by range
+<!-- To modify Package/Title/Description/Authors fields, edit the DESCRIPTION file -->
 
+## `GenomicFiles`: Distributed computing by file or by range
+
+### This package provides infrastructure for parallelcomputations distributed ‘by file’ or ‘by range’. User-defined MAPPER and REDUCER functions provide addedflexibility for data combination and manipulation.
+
+If you use `GenomicFiles`, please cite:
+
+<!-- Modify this by editing the file: inst/CITATION  -->
+
+## Installation
+
+``` r
+if (!require("BiocManager", quietly = TRUE))
+    install.packages("BiocManager")
+
+BiocManager::install("GenomicFiles")
+```
+
+## Documentation
+
+### [Website](https://bioconductor.github.io/GenomicFiles)
+
+### [Get started](https://bioconductor.github.io/GenomicFiles/articles/GenomicFiles)
+
+<br>