Workflow 12.0

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "limbo"]
+	path = limbo
+	url = https://github.com/kirilllzaitsev/limbo.git

CMakeLists.txt

@@ -0,0 +1,49 @@
+cmake_minimum_required(VERSION 3.21)
+project(ploidy-purity-cpp)
+
+if(NOT CMAKE_BUILD_TYPE)
+set(CMAKE_BUILD_TYPE "Debug" CACHE STRING "" FORCE)
+
+set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -O0")
+set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -O0")
+
+endif(NOT CMAKE_BUILD_TYPE)
+SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++11")
+SET(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -Wall -pedantic")
+SET(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O3")
+option(test "Build tests." ON)
+
+find_package(NLopt)
+add_definitions(-DUSE_NLOPT)
+add_definitions(-DPROFILE_TRACE)
+add_definitions(-DCLUSTER)
+
+file(GLOB ppc_src
+        "src/*.h"
+        "src/*.cpp"
+        )
+
+find_package (Eigen3 3.3 REQUIRED NO_MODULE)
+add_executable(PPC src/main.cpp ${ppc_src})
+
+target_include_directories(PPC PUBLIC limbo/src)
+target_link_libraries(PPC Eigen3::Eigen)
+
+get_cmake_property(_variableNames VARIABLES)
+list (SORT _variableNames)
+foreach (_variableName ${_variableNames})
+    message(STATUS "${_variableName}=${${_variableName}}")
+endforeach()
+
+find_package(OpenMP)
+if (OPENMP_FOUND)
+    set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
+    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
+    set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}")
+endif()
+
+find_package(Boost 1.74.0 COMPONENTS date_time filesystem system)
+include_directories(${Boost_INCLUDE_DIRS})
+target_link_libraries(PPC Eigen3::Eigen ${Boost_LIBRARIES})
+target_include_directories(PPC PUBLIC ${NLOPT_INCLUDE_DIRS})
+target_link_libraries(PPC ${NLOPT_LIBRARIES})