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[Maintenance] Remove cosmic download from init-command

MaintenanceSomething which needs to be updatedSomething which needs to be updated

Status: Open.

#1655 In Clinical-Genomics/BALSAMIC;

· mathiasbio opened on Feb 10, 2026

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Release 19

[Bug] Fix PON samplename parsing

BugSomething isn't workingSomething isn't working

Status: Open.

#1652 In Clinical-Genomics/BALSAMIC;

· mathiasbio opened on Feb 5, 2026

[User Story] Add TIDDIT to panel SV workflow

User-StoryA User-Story describing new functionalityA User-Story describing new functionality

Status: Open.

#1626 In Clinical-Genomics/BALSAMIC;

· mathiasbio opened on Oct 21, 2025

[User Story] Update Sentieon tools

Effort Small

Gain Medium

User-StoryA User-Story describing new functionalityA User-Story describing new functionality

Status: Open.

#1612 In Clinical-Genomics/BALSAMIC;

· mathiasbio opened on Sep 18, 2025

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Release 20

[User Story] Harmonise population and RD loqusdb filters across workflows

User-StoryA User-Story describing new functionalityA User-Story describing new functionality

Status: Open.

#1603 In Clinical-Genomics/BALSAMIC;

· mathiasbio opened on Aug 14, 2025

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Release 20

[Assessment] Breakend distance in SV obs-frequency annotation

AssessmentInvestigation before a user-story can be madeInvestigation before a user-story can be made

Needs Refinement

Status: Open.

#1598 In Clinical-Genomics/BALSAMIC;

· mathiasbio opened on Aug 4, 2025

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Release 20

[User Story] Speed up CADD indel annotation for WGS TO workflow

User-StoryA User-Story describing new functionalityA User-Story describing new functionality

Status: Open.

#1596 In Clinical-Genomics/BALSAMIC;

· mathiasbio opened on Aug 1, 2025

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Release 20

[User Story] Improve variants search across cancer cases in Scout

User-StoryA User-Story describing new functionalityA User-Story describing new functionality

Status: Open.

#1583 In Clinical-Genomics/BALSAMIC;

· mathiasbio opened on Jun 19, 2025

[User Story] Add IGHV mutation analysis

User-StoryA User-Story describing new functionalityA User-Story describing new functionality

Status: Open.

#1572 In Clinical-Genomics/BALSAMIC;

· mathiasbio opened on Apr 29, 2025

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Release 20

[User Story] PON for GMS lymphoid v 7.4

User-StoryA User-Story describing new functionalityA User-Story describing new functionality

Status: Open.

#1571 In Clinical-Genomics/BALSAMIC;

· moahaegglund opened on Apr 28, 2025

[User Story] Add more info on local databases used in Balsamic

User-StoryA User-Story describing new functionalityA User-Story describing new functionality

Status: Open.

#1569 In Clinical-Genomics/BALSAMIC;

· mathiasbio opened on Apr 23, 2025

[User Story] Clinical filtering based on gene and fusion lists

Effort Large

Gain Large

Needs Refinement

Urgency Medium

User-StoryA User-Story describing new functionalityA User-Story describing new functionality

Status: Open.

#1562 In Clinical-Genomics/BALSAMIC;

· fevac opened on Apr 15, 2025

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Release 20