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fix(remove fastq storing on deliverables)#178

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ChrOertlin wants to merge 1 commit intomainfrom
remove-fastq-deliverables
Open

fix(remove fastq storing on deliverables)#178
ChrOertlin wants to merge 1 commit intomainfrom
remove-fastq-deliverables

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@ChrOertlin
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@ChrOertlin ChrOertlin commented Nov 26, 2024

The purpose of the code changes are as follows:

  • Remove deliverables for fastq from the mutant deliverables file.

Preparations:

How to prepare mutant for test:

  • cd MUTANT
  • bash mutant/standalone/deploy_hasta_update.sh stage <MUTANT_branch>

How to prepare cg for test:

  • us
  • Paxa and update cg:
    • paxa -u <user> -s hasta -r cg-stage
    • bash update-cg-stage.sh master
  • If needed, paxa and update servers:
    • paxa -u <user> -s hasta -r servers-stage
    • bash update-servers-stage.sh <master/branch>

How to test:

Run in a tmux screen or similar if testing on a large dataset.

Test with cg:

  • us
  • cg workflow mutant start maturejay

Expected outcome:

  • Produced files contain expected values

Review:

  • Code reviewed by

This version is a:

  • MAJOR - when you make incompatible API changes
  • MINOR - when you add functionality in a backwards compatible manner
  • PATCH - when you make backwards compatible bug fixes or documentation/instructions

@ChrOertlin ChrOertlin requested a review from karlnyr November 26, 2024 09:18
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