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Bug: Mismatch in Black version between Github action and Pre-commit-config

Bug

Status: Open.

#4889 In Clinical-Genomics/cg;

· RasmusBurge-CG opened on Feb 14, 2026

gens v4 load config

Status: Open.

#4888 In Clinical-Genomics/cg;

· dnil opened on Feb 13, 2026

Move target bed, verifybamid, and gcnvcaller parameter selection logic to cg from servers

Status: Open.

#4886 In Clinical-Genomics/cg;

· ramprasadn opened on Feb 10, 2026

Add cosmic-file path to balsamic config case (v19.0.0 of balsamic)

Status: Open.

#4885 In Clinical-Genomics/cg;

· mathiasbio opened on Feb 10, 2026

[RD-hg38] Remove genotype upload for all pipelines

RD hg38Issues related to the switch from hg19 to hg38Issues related to the switch from hg19 to hg38

Status: Open.

#4883 In Clinical-Genomics/cg;

· Vince-janv opened on Feb 10, 2026

Upload Nallo cases to gens

Status: Open.

#4879 In Clinical-Genomics/cg;

· fellen31 opened on Feb 9, 2026

Remove validation errors for derived SARS-CoV-2 fields not shown in the Order Portal

Bug

Status: Open.

#4878 In Clinical-Genomics/cg;

· moedarrah opened on Feb 6, 2026

Add cancer-genelist argument to balsamic (v19.0.0 of balsamic)

Status: Open.

#4870 In Clinical-Genomics/cg;

· mathiasbio opened on Feb 4, 2026

Add customer case-name to balsamic config case (v19.0.0 of balsamic)

Status: Open.

#4869 In Clinical-Genomics/cg;

· mathiasbio opened on Feb 3, 2026

Allow balsamic cache selection in CGConfig

Status: Open.

#4862 In Clinical-Genomics/cg;

· Vince-janv opened on Jan 28, 2026

Ensure old data passes Sequencing QC

Status: Open.

#4861 In Clinical-Genomics/cg;

· Vince-janv opened on Jan 28, 2026

Add validation to prevent ordering mip analyses of samples without relationships

Gain L

Urgency L

Status: Open.

Feature

#4859 In Clinical-Genomics/cg;

· karlnyr opened on Jan 28, 2026