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Remove swedac logo from alignment page, clarify scope of accreditation#222

Merged
karlnyr merged 2 commits intorc4.2.8from
fix/remove-swedac-qc-clarify-typing
Jan 27, 2026
Merged

Remove swedac logo from alignment page, clarify scope of accreditation#222
karlnyr merged 2 commits intorc4.2.8from
fix/remove-swedac-qc-clarify-typing

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@karlnyr karlnyr commented Jan 22, 2026

Description

Alignment page updates:

  • Removed the conditional display of the Swedac logo from the alignment_page.html template, simplifying the page layout.

Documentation and language improvements:

  • Updated the text in typing_page.html to clarify that Clinical Genomics is accredited for typing and resistance determination for certain organisms, improving the accuracy of the documentation.

Primary function of PR

  • Hot-fix
  • Patch
  • Minor functionality improvement
  • New type of analysis
  • Backward-breaking functionality improvement
  • This change requires internal documents to be updated
  • This change requires another repository to be updated

Testing

  • bash /home/proj/production/servers/resources/hasta.scilifelab.se/install-microsalt-stage.sh BRANCHNAME
  • us
  • conda activate S_microSALT
  • microSALT analyse --input /path/to/fastq/ SAMPLEINFO_FILE

Test results

These are the results of the tests, and necessary conclusions, that prove the stability of the PR.

Sign-offs

  • Approved to run at Clinical-Genomics by @karlnyr or @Clinical-Genomics/micro

@karlnyr karlnyr requested a review from a team as a code owner January 22, 2026 09:28
@karlnyr karlnyr merged commit 50018a2 into rc4.2.8 Jan 27, 2026
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2 participants