Rc4.2.8

[karlnyr]

Description

This version addresses the SWEDAC deviation regarding the clarity of the scope of accreditation and the mention of the accreditation in the QC report.

Version update:

• Bumped the application version in microSALT/__init__.py from 4.2.7b to 4.2.8.

Template and content changes:

Branding changes:

• Removed the conditional display of the Swedac logo for samples with the MW application tag in alignment_page.html.

Accreditation and organism list:

• Updated the accreditation statement in typing_page.html to clarify that Clinical Genomics is accredited for typing and resistance determination for the listed organisms, replacing the previous manual verification wording.

Primary function of PR

• Hot-fix
• Patch
• Minor functionality improvement
• New type of analysis
• Backward-breaking functionality improvement
• This change requires internal documents to be updated
• This change requires another repository to be updated

Testing

• bash /home/proj/production/servers/resources/hasta.scilifelab.se/install-microsalt-stage.sh BRANCHNAME
• us
• conda activate S_microSALT
• microSALT analyse --input /path/to/fastq/ SAMPLEINFO_FILE

Test results

These are the results of the tests, and necessary conclusions, that prove the stability of the PR.

Sign-offs

• Approved to run at Clinical-Genomics by @karlnyr or @Clinical-Genomics/micro