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Add SNV variant scoring by MIVMIR, GICAM models#33

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torbjorgen wants to merge 2 commits intoClinical-Genomics:devfrom
torbjorgen:integrate-mivmir
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Add SNV variant scoring by MIVMIR, GICAM models#33
torbjorgen wants to merge 2 commits intoClinical-Genomics:devfrom
torbjorgen:integrate-mivmir

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@torbjorgen torbjorgen commented Nov 21, 2025

Here's a branch running MIVMIR and GICAM models for SNVs.

Runs locally with -profile test,docker

TODOs

  • Update GICAM model trained on genmod config without MTAF scoring (config not working in _SNV flow)
  • Solve access to additional genmod rank config .ini file (now stored in ./assets)

@torbjorgen torbjorgen force-pushed the integrate-mivmir branch 3 times, most recently from dcabb7b to 1830584 Compare December 3, 2025 08:40
Signed-off-by: Tor Björgen <tor.bjorgen@scilifelab.se>
Signed-off-by: Tor Björgen <tor.bjorgen@scilifelab.se>
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