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60 changes: 37 additions & 23 deletions README.md
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Expand Up @@ -11,7 +11,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su
* MRI/fMRI/Behavioral assessments/Endocrine procedures
* The participant underwent daily testing for 30 consecutive days
* Siemens 3T Prisma
* MRI data, code, and daily behavioral assessments will be publicly accessible upon publication.
* MRI data, code, and daily behavioral assessments will be publicly accessible upon publication.
* https://doi.org/10.1101/866913

### A densely sampled longitudinal dataset from healthy infants
Expand Down Expand Up @@ -85,10 +85,10 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su
* N = 1
* male
* 29-46 years old
* Data
* Data
* multiple sites and with various scanner models
* sMRI, rsfMRI, dMRI, ASL, ...
* scanned in 73 sessions at
* scanned in 73 sessions at
* http://fcon_1000.projects.nitrc.org/indi/retro/SIMON.html

### Canadian subject dataset (Csub)
Expand All @@ -98,7 +98,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su
* N = 1
* male
* 42 years old
* Data
* Data
* 13 sites, 3T Philips, Siemens and GE
* sMRI, rsfMRI
* 25 scanning sessions
Expand All @@ -125,7 +125,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su
* 6 female, 2 males
* 24-32 years old
* Data
* 3T Siemens
* 3T Siemens
* sMRI, rsfMRI, T2 Hippocampus, DTI, MRS
* **11-50 scans**
* Filevich, Elisa, et al. "Day2day: investigating daily variability of magnetic resonance imaging measures over half a year." BMC neuroscience 18.1 (2017): 65.
Expand Down Expand Up @@ -164,7 +164,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su
* Male
* 45 years old
* Data
* 3T Siemens
* 3T Siemens
* sMRI, rsfMRI, task fMRI, T2
* **104 scans**
* Poldrack, Russell A., et al. "Long-term neural and physiological phenotyping of a single human." Nature communications 6 (2015): 8885.
Expand Down Expand Up @@ -203,7 +203,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su
* 19 females, 15 males
* 34-85 years old
* Data
* 1.5T & 3T, GE & Siemens
* 1.5T & 3T, GE & Siemens
* sMRI
* 10-24 scans
* Yang, Chung-Yi, et al. "Reproducibility of brain morphometry from short-term repeat clinical MRI examinations: a retrospective study." PloS one 11.1 (2016): e0146913.
Expand All @@ -223,20 +223,20 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su
* Sites
* Emory University
* Harvard University
* University of Calgary
* University of Calgary
* University of California Los Angeles (UCLA)
* University of California San Diego (UCSD)
* University of North Carolina Chapel Hill (UNC)
* Yale University
* University of California San Diego (UCSD)
* University of North Carolina Chapel Hill (UNC)
* Yale University
* Zucker Hillside Hospital (ZHH)

### 8 healthy traveling subjects
* ?
* No download link
* Subjects
* N = 8
* Data
* 3T scanners/ 8 healthy adults acted as traveling phantoms, and were scanned twice at each of the four sites
* 3T scanners/ 8 healthy adults acted as traveling phantoms, and were scanned twice at each of the four sites
* 1.5 T Siemens Sonata at UA, 3 T Siemens Trio at QU and UM, and 3 T Philips Intera at UBC
* Long, Xiangyu, et al. "Sensorimotor network alterations in children and youth with prenatal alcohol exposure." Human brain mapping (2018).
* Sites
Expand Down Expand Up @@ -302,7 +302,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su

### Reproducibility of quantitative structural and physiological MRI measurements
* Reproducibility of quantitative structural and physiological MRI measurements
*
*
* Subjects
* N = 25
* 5 females, 20 males
Expand All @@ -319,7 +319,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su
* Subjects
* N = 1
* Data
* plan to collect at least one structural image per month
* plan to collect at least one structural image per month
* ref?

### Continuous scanning of the migraine cycle over 30 days
Expand Down Expand Up @@ -350,25 +350,25 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su
* N = 4
* Data
* Biosemi data in BDF format were recorded from 128 electrodes at 512 Hz.

### A dataset with T1 and multiple task fMRI
* Single subject fMRI test–retest reliability metrics and confounding factors
* https://www.sciencedirect.com/science/article/pii/S1053811912010890?via%3Dihub
* Subject
* N = 10, 50-58 years
* 2 sessions, T1 and 4 tasks in each session
* Data
* GE 1.5T
* GE 1.5T
* T1 & task fMRI
* two/three days apart
* Gorgolewski, Krzysztof J., et al. "Single subject fMRI test–retest reliability metrics and confounding factors." Neuroimage 69 (2013): 231-243.

### Multi-parametric neuroimaging reproducibility
* Multi-parametric neuroimaging reproducibility: A 3-T resource study
* Subject
* Subject
* N = 21, 11M/10F
* 22-61 years old
* Data
* Data
* multiple paramatric scanning
* T1, DTI, rs-fMRI, ASL, & QT1, QT2, et al.
* Landman, Bennett A., et al. "Multi-parametric neuroimaging reproducibility: a 3-T resource study." Neuroimage 54.4 (2011): 2854-2866.
Expand Down Expand Up @@ -411,10 +411,10 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su
### OASIS Longitudinal
* OASIS Longitudinal
* https://www.oasis-brains.org/
* Subject
* Subject
* N = 150
* 60-96 years old
* Data
* Data
* 1.5 T scanner
* T1
* two or more scans, at least one year (183-1707 day intervals)
Expand Down Expand Up @@ -476,9 +476,9 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su
* Subjects
* N = 12
* 10 males, 2 females
* age between 26 and 40 years old (median = 34.5 years)
* age between 26 and 40 years old (median = 34.5 years)
* Data
* Siemens 3T
* Siemens 3T
* T1/T2/dMRI/task fMRI
* multiple tasks for each subject, Spatial, Standard, Social, Emotional, Emotion, Gambling, Motor, Language, Relational, WM
* Pinho, Ana Luísa, et al. "Individual Brain Charting, a high-resolution fMRI dataset for cognitive mapping." Scientific data 5 (2018).
Expand All @@ -494,3 +494,17 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su
* T1/T2/FLAIR/PD
* each subject has 4 ~ 6 time-point scans
* Carass, A., Roy, S., et al. (2017). Longitudinal multiple sclerosis lesion segmentation: Resource and challenge. NeuroImage, 148, 77–102


### CNeuroMod
* The Courtois Project on Neuronal Modelling
* https://cneuromod.ca/
* Subjects
* N = 6
* 3 males, 3 females
* Data
* Siemens 3T
* T1/T2/qMRI brain + cervical spine
* ~200h of fMRI per subject
* multiple tasks: controlled an naturalistic, movie watching, videogames, vision, memory, audition, language
* Boyle, J.A., Pinsard, B., et al. (June 2020). The Courtois project on neuronal modelling - 2020 data release. Poster 1939 was presented at the 2020 Annual Meeting of the Organization for Human Brain Mapping, held virtually.