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CshlSiepelLab

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  1. phast phast Public

    PHAST

    C 80 28

  2. LINSIGHT LINSIGHT Public

    C++ 26 9

  3. arg-selection arg-selection Public

    ARG-based inference of selection using deep learning

    Python 17 3

  4. argweaver argweaver Public

    Forked from mjhubisz/argweaver

    Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

    C++ 14 3

  5. RPHAST RPHAST Public

    RPHAST: Phylogenetic Analysis with Space/Time Models in R

    C 11 4

  6. super-enhancer-code super-enhancer-code Public

    Code for Nature Genetics correspondance, "Is a super-enhancer greater than the sum of its parts?" (2016).

    R 8 2

Repositories

Showing 10 of 24 repositories
  • vine Public

    Variational Inference with Node Embedding for Bayesian phylogenetics

    CshlSiepelLab/vine’s past year of commit activity
    C 2 0 0 0 Updated Feb 5, 2026
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    CshlSiepelLab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,755 0 0 Updated Feb 5, 2026
  • phast Public

    PHAST

    CshlSiepelLab/phast’s past year of commit activity
    C 80 BSD-3-Clause 28 2 3 Updated Feb 4, 2026
  • homebrew-tools Public

    support for homebrew distributions

    CshlSiepelLab/homebrew-tools’s past year of commit activity
    Ruby 0 0 0 0 Updated Jan 26, 2026
  • staged-recipes Public Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    CshlSiepelLab/staged-recipes’s past year of commit activity
    Python 0 BSD-3-Clause 5,747 0 0 Updated Jan 5, 2026
  • arg_explorer Public

    Repo for running and comparing ARG inference methods

    CshlSiepelLab/arg_explorer’s past year of commit activity
    Python 0 0 0 0 Updated Oct 17, 2025
  • argweaver-d-analysis Public

    Scripts for Hubisz et al 2019 "Mapping gene flow between ancient hominins..."

    CshlSiepelLab/argweaver-d-analysis’s past year of commit activity
    R 8 2 2 0 Updated Sep 29, 2025
  • LINSIGHT Public
    CshlSiepelLab/LINSIGHT’s past year of commit activity
    C++ 26 BSD-2-Clause 9 1 0 Updated Jun 4, 2025
  • DENR Public

    Select the most actively transcribed transcript model using PRO-seq

    CshlSiepelLab/DENR’s past year of commit activity
    R 3 MIT 4 0 0 Updated Apr 18, 2025
  • SimPol Public
    CshlSiepelLab/SimPol’s past year of commit activity
    HTML 2 MIT 1 0 0 Updated Feb 12, 2025
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