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DaneshjouLab / AutoGKB Public

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feat: data-setup pipeline#21

Merged

shloknatarajan merged 14 commits intomainDaneshjouLab/AutoGKB:mainfrom

shlok/feat/data-setup-pipelineDaneshjouLab/AutoGKB:shlok/feat/data-setup-pipelineCopy head branch name to clipboard

Oct 3, 2025

Conversation Commits14 (14)Checks Files changed

Merged

feat: data-setup pipeline#21
shloknatarajan merged 14 commits intomainfrom
shlok/feat/data-setup-pipeline

Commits

Commits on Oct 1, 2025

feat: pmcid conversion
shloknatarajan
committed
fix: everything uses Paths
shloknatarajan
committed
feat: folder rename
shloknatarajan
committed
feat: better cacheing and pmcid grouping
shloknatarajan
committed
fix: nan value handling
shloknatarajan
committed

Commits on Oct 2, 2025

feat: add title to pmcid grouping
shloknatarajan
committed
feat: cleanup notebooks and add benchmark articles
shloknatarajan
committed
chore: removed unused file
shloknatarajan
committed
fix: better paths and logging counts
shloknatarajan
committed
fix: pmcid groupings fixed
shloknatarajan
committed

Commits on Oct 3, 2025

feat: working markdown download
shloknatarajan
committed
checkpoint: working markdown downloader and title fetcher
shloknatarajan
committed
feat: working pipeline with term lookup (untested if term lookup works with other code)
shloknatarajan
committed
chore: linting
shloknatarajan
committed

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