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Feat/integrate fa and drug evaluations into benchmark scaffold#25

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shloknatarajan merged 4 commits intomainfrom
feat/integrate-fa-drug-benchmark
Nov 4, 2025
Merged

Feat/integrate fa and drug evaluations into benchmark scaffold#25
shloknatarajan merged 4 commits intomainfrom
feat/integrate-fa-drug-benchmark

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@miagarvey
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@miagarvey miagarvey commented Oct 31, 2025

integrate fa and drug evaluations into benchmark scaffold

⚙️ Release Notes

Functional Analysis (FA) benchmark:

  • Variant expansion + alignment by rsID/normalized substring
  • Field-wise scoring (exact/category/semantic), with optional dependency checks

Drug benchmark

  • Variant expansion/alignment like FA
  • Operator-aware Drug(s) scoring using Multiple drugs And/or
  • Allele and comparison group set-coverage scoring
  • Normalized category comparisons (lowercase + collapsed whitespace)
  • PD/PK terms scored with semantic similarity

Scaffold

  • AnnotationBenchmark now calls FA and Drug evaluators with minimal changes

@shloknatarajan shloknatarajan merged commit 2887e76 into main Nov 4, 2025
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2 participants