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integrate study parameters benchmark with variant ann ID alignment#28

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miagarvey wants to merge 1 commit intomainfrom
feat/study-params-benchmark
Open

integrate study parameters benchmark with variant ann ID alignment#28
miagarvey wants to merge 1 commit intomainfrom
feat/study-params-benchmark

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Integrate study parameters benchmark with variant ann ID alignment

⚙️ Release Notes

Study Parameters benchmark:

  • Alignment by Variant Annotation ID (exact match)
  • Field-wise scoring: exact match (IDs), category match (Study Type, Ratio Stat Type, Biogeographical Groups), numeric tolerance (Study Cases/Controls, frequencies, Ratio Stat, CI bounds), semantic similarity (Characteristics, allele fields)
  • Special P Value parsing: extracts operator (<, >, =, ≤, ≥) and numeric value, combined scoring (50% operator + 50% value)
  • Numeric tolerance matching: exact = 1.0, within 5% = 0.9, within 10% = 0.8
    Scaffold:
  • AnnotationBenchmark now calls Study Parameters evaluator with minimal changes

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