Feat/standardize benchmarks#29

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miagarvey wants to merge 7 commits intomainfrom

feat/standardize-benchmarks

Commits on Nov 6, 2025

add study parameters benchmark with variant ann ID alignment
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Commits on Nov 13, 2025

Standardize FA, Drug, and Study Parameters benchmarks
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feat: standardize fa, drug, study params benchmarks
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feat: Standardize pheno benchmark to match FA/Drug/StudyParams: detailed results dict, 0-1 scale, shared_utils evaluators, configurable field_weights, direct ground truth parameter
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Commits on Nov 17, 2025

adding benchmark comparison script
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Commits on Nov 20, 2025

updated alignment system to best match rather than using variant IDs
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Commits on Nov 24, 2025

displays detailed results with error explanations, added benchmark analysis summary of first 5 articles, fully removed variant id and study params id from study params score, modified pheno alignment
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