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Run all checker workflows from a single script #76

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Run all checker workflows from a single script #76

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3 changes: 2 additions & 1 deletion .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -12,4 +12,5 @@ assoc-aggregate/cromwell-68.1.jar
*.integer
*.zip
cwl.output.json
job.json
job.json
_test-data-and-truths_/assoc/big_silly_file_chr1.gds
8 changes: 8 additions & 0 deletions _test-data-and-truths_/runtests.sh
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@@ -0,0 +1,8 @@
#!/bin/bash
# run from the parent directory analysis_pipeline_wdl, not from the test data directory

ddoc vcf-to-gds/checker/vcf-to-gds-checker.wdl --json vcf-to-gds/checker/vcf-to-gds-checker.json
ddoc ld-pruning/checker/ld-pruning-checker.wdl --json ld-pruning/checker/ld-pruning-checker.json
ddoc king/checker/king-checker.wdl --json king/checker/king-checker.json
ddoc null-model/checker/null-model-checker.wdl --json null-model/checker/null-model-checker.json
ddoc assoc-aggregate/checker/assoc-aggregate-checker.wdl --json assoc-aggregate/checker/assoc-aggregate-checker.json