oregan-heterogeneous-transmission

Modeling heterogeneous transmission using mixture models Protocol

Updated Protocol

Manuscript can be found on Overleaf

Name		Name	Last commit message	Last commit date
Latest commit History 62 Commits
FiniteMixtureModelsOfSuperspreadingInEpidemics_ manuscript_code_and_figures		FiniteMixtureModelsOfSuperspreadingInEpidemics_ manuscript_code_and_figures
Superspreading draft 1		Superspreading draft 1
Superspreading draft 2		Superspreading draft 2
Superspreading draft 3		Superspreading draft 3
.gitignore		.gitignore
Aerosol_transmission_protocol (1).pdf		Aerosol_transmission_protocol (1).pdf
Althouseetal2020BranchingProcess.png		Althouseetal2020BranchingProcess.png
BranchingProcesses.pdf		BranchingProcesses.pdf
CVcaseplot.pdf		CVcaseplot.pdf
CVchainplot.pdf		CVchainplot.pdf
Lab meeting presentation Nov 21.Rmd		Lab meeting presentation Nov 21.Rmd
Lab-meeting-presentation-Nov-21.log		Lab-meeting-presentation-Nov-21.log
Lab-meeting-presentation-Nov-21.pdf		Lab-meeting-presentation-Nov-21.pdf
Lab-meeting-presentation-Nov-21.tex		Lab-meeting-presentation-Nov-21.tex
Negative binomial mixture model of superspreading with R0 less than 1.Rmd		Negative binomial mixture model of superspreading with R0 less than 1.Rmd
Negative binomial mixture model of superspreading.Rmd		Negative binomial mixture model of superspreading.Rmd
Negative-binomial-mixture-model-of-superspreading-with-R0-less-than-1.pdf		Negative-binomial-mixture-model-of-superspreading-with-R0-less-than-1.pdf
Negative-binomial-mixture-model-of-superspreading.pdf		Negative-binomial-mixture-model-of-superspreading.pdf
NewFig1.Rmd		NewFig1.Rmd
NewFig1.html		NewFig1.html
Outline.Rmd		Outline.Rmd
Outline.pdf		Outline.pdf
ProbChainSizeOne.Rmd		ProbChainSizeOne.Rmd
ProbChainSizeOne.html		ProbChainSizeOne.html
README.md		README.md
Superspreading Poisson mixture branching process.Rmd		Superspreading Poisson mixture branching process.Rmd
Superspreading geometric mixture branching process.Rmd		Superspreading geometric mixture branching process.Rmd
Superspreading negative binomial cluster size distribution.Rmd		Superspreading negative binomial cluster size distribution.Rmd
Superspreading negative binomial simulation.Rmd		Superspreading negative binomial simulation.Rmd
Superspreading negative binomial simulation.nb.html		Superspreading negative binomial simulation.nb.html
Superspreading negative binomial statistics.Rmd		Superspreading negative binomial statistics.Rmd
Superspreading old version.Rmd		Superspreading old version.Rmd
Superspreading-Poisson-mixture-branching-process.pdf		Superspreading-Poisson-mixture-branching-process.pdf
Superspreading-geometric-mixture-branching-process.pdf		Superspreading-geometric-mixture-branching-process.pdf
Superspreading-negative-binomial-simulation.pdf		Superspreading-negative-binomial-simulation.pdf
compcdfplot.pdf		compcdfplot.pdf
controlplot.pdf		controlplot.pdf
fig_ProbChainOne.pdf		fig_ProbChainOne.pdf
gammadistrib.pdf		gammadistrib.pdf
majoroutbreakplot.pdf		majoroutbreakplot.pdf
meanchainplot.pdf		meanchainplot.pdf
minoroutbreakplot.pdf		minoroutbreakplot.pdf
newfig1.pdf		newfig1.pdf
oregan-heterogeneous-transmission.Rproj		oregan-heterogeneous-transmission.Rproj
pgfplot.pdf		pgfplot.pdf
pmfplot.pdf		pmfplot.pdf
probzerosecondplot.pdf		probzerosecondplot.pdf
references.bib		references.bib
stats.csv		stats.csv
stats2.csv		stats2.csv

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