Quick and easy analysis of ATAC-seq data for visualisation using the UCSC genome browser.
Specify options:
f - Sample name (in format: clone_celltype_condition_rep)
d - Path to directory containing gun-zipped fastqs
r - Read type (single or paired-end)
g - Genome build (mm39, mm39-R2 or hg38)
n - Bowtie2 prefix (i.e. xxx.1.bt2)